View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_16 (Length: 365)
Name: NF15773_low_16
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 6720531 - 6720863
Alignment:
| Q |
17 |
agaaggatctgctcatgctcctgtgagatgatcctaatgatctatgcattctaggccttgatctgtaggacttttgtgtgtcatctgatgctgagaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6720531 |
agaaggatctgctcatgctcctgtgagatgatcctaatgatctatgcattctaggccttgatctgtaggacttttgtgtgtcatctgatgctgagaaatc |
6720630 |
T |
|
| Q |
117 |
aaacatagcacaaacaaaatcagcaatcgggaaaatcaaaaggaagagatacaattacacagcaacatcccaaattgaaactcacccatatctgatccat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6720631 |
aaacatagcacaaacaaaatcagcaatcggggaaatcaaaaggaagagatacaattacacagcaacatcccaaattgaaactcacccatatctgatccat |
6720730 |
T |
|
| Q |
217 |
gccaaatggtattttcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattcctctgcagcttcacttcaatacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6720731 |
gccaaatggtattttcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattcctctgcagcttcacttcaatacc |
6720830 |
T |
|
| Q |
317 |
attggtaagaacctgcacgtttttcatgaaaca |
349 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
6720831 |
attggtaagaacctgcacatttttcatgaaaca |
6720863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 52219828 - 52219930
Alignment:
| Q |
231 |
tcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattcctctgcagcttcacttcaataccattggtaagaacct |
330 |
Q |
| |
|
||||||||||||||||||||||| ||| || || |||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
52219828 |
tcaaattcaaggtcatcatcttcttcgttgccagtgggtgcttcaatcacactaagagcattcctttgcagcttcacttcaattccattagtaagaacct |
52219927 |
T |
|
| Q |
331 |
gca |
333 |
Q |
| |
|
||| |
|
|
| T |
52219928 |
gca |
52219930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 52219216 - 52219327
Alignment:
| Q |
17 |
agaaggatctgctcatgctcctgtgagatgatcctaatgatctatgcattctaggccttgatctgtaggacttttgtgtgtcatctgatgctgagaaatc |
116 |
Q |
| |
|
||||||| || |||||| || ||||| ||||||| ||||||||||||||||| |||| ||| ||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
52219216 |
agaaggacctactcatggtcttgtgacatgatcccaatgatctatgcattctgtgcctcgatttgtgagacttgtgtgtatcgtctgatgctgagaaatc |
52219315 |
T |
|
| Q |
117 |
aaacatagcaca |
128 |
Q |
| |
|
||||||| |||| |
|
|
| T |
52219316 |
aaacataacaca |
52219327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University