View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_19 (Length: 354)

Name: NF15773_low_19
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_19
NF15773_low_19
[»] chr2 (15 HSPs)
chr2 (54-354)||(8412200-8412500)
chr2 (54-354)||(8434298-8434598)
chr2 (52-354)||(8406078-8406380)
chr2 (52-354)||(8395192-8395494)
chr2 (54-329)||(8375531-8375806)
chr2 (54-329)||(8439297-8439572)
chr2 (52-329)||(8417413-8417690)
chr2 (179-302)||(8431353-8431476)
chr2 (293-354)||(8394949-8395010)
chr2 (226-293)||(41119234-41119301)
chr2 (244-332)||(8404329-8404417)
chr2 (226-329)||(8368638-8368741)
chr2 (226-292)||(8400706-8400772)
chr2 (226-292)||(8422283-8422349)
chr2 (104-161)||(8404183-8404240)
[»] chr4 (2 HSPs)
chr4 (55-155)||(55331017-55331117)
chr4 (54-143)||(55336451-55336540)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 8412200 - 8412500
Alignment:
Q  54 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 153  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  154 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8412300 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8412399  T
Q  254 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagagaacagtttcatagccataagtgg 353  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8412400 cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg 8412499  T
Q  354 t 354  Q
    |    
T  8412500 t 8412500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 8434298 - 8434598
Alignment:
Q  54 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 153  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  154 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8434398 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8434497  T
Q  254 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagagaacagtttcatagccataagtgg 353  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8434498 cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg 8434597  T
Q  354 t 354  Q
    |    
T  8434598 t 8434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 52 - 354
Target Start/End: Original strand, 8406078 - 8406380
Alignment:
Q  52 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 151  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8406078 gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt 8406177  T
Q  152 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 251  Q
    |||||||| | || |||||||||||  |||||||||||| ||| ||||||||||  ||||  ||||||||||| |||||||| ||||| ||||| |||||    
T  8406178 ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg 8406277  T
Q  252 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagagaacagtttcatagccataagt 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8406278 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt 8406377  T
Q  352 ggt 354  Q
    |||    
T  8406378 ggt 8406380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 52 - 354
Target Start/End: Complemental strand, 8395494 - 8395192
Alignment:
Q  52 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 151  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8395494 gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt 8395395  T
Q  152 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 251  Q
    |||||||| | || |||||||||||  |||||||||||| ||| ||||||||||  ||||  ||||||||||| |||||||| ||||| ||||| |||||    
T  8395394 ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg 8395295  T
Q  252 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagagaacagtttcatagccataagt 351  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8395294 ttcctctgtgagttgagagggttggattttgttcatgataatcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt 8395195  T
Q  352 ggt 354  Q
    |||    
T  8395194 ggt 8395192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 54 - 329
Target Start/End: Complemental strand, 8375806 - 8375531
Alignment:
Q  54 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 153  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  154 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8375706 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8375607  T
Q  254 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 329  Q
    |||| |  | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8375606 cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga 8375531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 54 - 329
Target Start/End: Original strand, 8439297 - 8439572
Alignment:
Q  54 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 153  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  154 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 253  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  8439397 attgcatctttgacatcttcctcggtaggatttcctatagcaattttagtttggatttgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8439496  T
Q  254 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 329  Q
    |||| |  | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8439497 cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga 8439572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 8417413 - 8417690
Alignment:
Q  52 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 151  Q
    ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||| ||||| |||||||| | |||||| ||| | |||||||| ||||    
T  8417413 gaaggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatcatgtgccaaaacttttt 8417512  T
Q  152 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 251  Q
    | || || |||||||||||||| |  |||| |||||||| ||||||| | |||| ||| ||||||||||||||||||||||| ||||| |  || | |||    
T  8417513 caatagcttctttgacatcttctttagtagaatttccaagagcaatttttgtttggatttgactttgaagttgcttgaacaatcttgtagtgtttcattg 8417612  T
Q  252 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 329  Q
     ||||| |  | |||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||    
T  8417613 ctcctcggccaattgagaaggttggattttgttcatgataagcaacaatccggtggctgcagaaaacaaaagagcaga 8417690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 8431353 - 8431476
Alignment:
Q  179 taggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat 278  Q
    |||||||||||| ||||||||||||||  || || |||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  8431353 taggatttccaagagcaattgtagtttgaatttgcctttgaagttacttgaacaatcttgtggcattcctttgttcttctgtgagttgagagggttggat 8431452  T
Q  279 tttgttcatgataagcaataatcc 302  Q
    |||||||||||||||||| |||||    
T  8431453 tttgttcatgataagcaacaatcc 8431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 8395010 - 8394949
Alignment:
Q  293 gcaataatccagtggcagcagagaataaaagagcagagaacagtttcatagccataagtggt 354  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8395010 gcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggt 8394949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 41119234 - 41119301
Alignment:
Q  226 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataag 293  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  41119234 ttgaacattcttgtagcattcctttgttcctctgtgagttgagagggttggggtttgttcatgataag 41119301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 8404329 - 8404417
Alignment:
Q  244 ttcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagagaa 332  Q
    ||||||||||| ||||  ||||| || ||||||||||||||||| | ||| |||| ||||||||| ||||| ||||| | |||||||||    
T  8404329 ttcctttgttcttctgcaagttgtgaaggttggattttgttcatcacaagtaatattccagtggcggcagaaaataacatagcagagaa 8404417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 8368638 - 8368741
Alignment:
Q  226 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagag 325  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||  || |  ||||| | ||| ||||||||||| |    
T  8368638 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtg 8368737  T
Q  326 caga 329  Q
    ||||    
T  8368738 caga 8368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 8400772 - 8400706
Alignment:
Q  226 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa 292  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||    
T  8400772 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa 8400706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 8422349 - 8422283
Alignment:
Q  226 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa 292  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||    
T  8422349 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa 8422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 8404183 - 8404240
Alignment:
Q  104 ctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttccattgcatc 161  Q
    |||||||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||    
T  8404183 ctcctaataaaggaagtggataggctttatcaagagccaaaaccttctcaattgcatc 8404240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 55331017 - 55331117
Alignment:
Q  55 ggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcca 154  Q
    |||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| |||||||| || ||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  155 t 155  Q
    |    
T  55331117 t 55331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 55336451 - 55336540
Alignment:
Q  54 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaa 143  Q
    ||||||||||  || ||| ||| ||||||||||  | ||||||||||| |||||||| |  ||||||||||| ||||||||||| |||||    
T  55336451 aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaa 55336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University