View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_2 (Length: 505)
Name: NF15773_low_2
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Original strand, 36954752 - 36955264
Alignment:
| Q |
11 |
tatcatctcctctcctagtttagtttaactttttggagtattcacataacatatttcgaccataattaggtcattcaatttgagactgaggaagtaagta |
110 |
Q |
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| T |
36954752 |
tatcatctcctctcctagtttagtttaactttttggagtattcacataacatatttcgaccataattaggtcattcaatttgagactgaggaagtaagta |
36954851 |
T |
|
| Q |
111 |
----------------gtaacgtacctcttctgtgttcaacgacgcctttcctgggttgacccatcatcgaaatgggtttaacccgctccaccggcac-- |
192 |
Q |
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| T |
36954852 |
agtaagtaagtaagtagtaacgcacctcttctgtgttcaacgacgcctttcctgggttgacccatcatcgaaatgggtttaacctgctccaccggcacaa |
36954951 |
T |
|
| Q |
193 |
----------ctccttcacaggaaacaaaaccccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgaccc |
282 |
Q |
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| T |
36954952 |
cttctttctcctccttcataggaaacaaaaccccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgaccc |
36955051 |
T |
|
| Q |
283 |
atcaccatctccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaaca |
382 |
Q |
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| T |
36955052 |
atcaccatctccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacctaaccttcccaaatctcctaaca |
36955151 |
T |
|
| Q |
383 |
gcattatacatactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttcacttaactcctccgtcgttaact |
482 |
Q |
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| T |
36955152 |
gcattatacatactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttcacttaactcctccgtcgttaact |
36955251 |
T |
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| Q |
483 |
tcgcctttgcttc |
495 |
Q |
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| T |
36955252 |
tcgccattgcttc |
36955264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 203 - 483
Target Start/End: Complemental strand, 17749315 - 17749035
Alignment:
| Q |
203 |
ggaaacaaaaccccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaa |
302 |
Q |
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| T |
17749315 |
ggaaacaaaactccatcaatcccttgcacagaaatcctcccatccgtataaatatccgggtcaaacaaatatgccgaaccatcaccatgcccgaatttaa |
17749216 |
T |
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| Q |
303 |
cagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattatacatactctcttc |
402 |
Q |
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| T |
17749215 |
ccgacccatcagcttcttcagcatcaaccttatgaggcaatctcaaagtatcatacctcaccttcccaaatcttctaacagcattatacatactctcttc |
17749116 |
T |
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| Q |
403 |
cgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttcacttaactcctccgtcgttaactt |
483 |
Q |
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| T |
17749115 |
agtttgatactcaggaatcaaatgatagtacataatttgttccggtgaacccggttcactcaattggtccgttgttaactt |
17749035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 459
Target Start/End: Original strand, 43480067 - 43480308
Alignment:
| Q |
218 |
tcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcagctt |
317 |
Q |
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||||| |||||||| ||||| || || ||||| |||||||| ||||||||||||||| | || |||||| | |||||||||||||| || |||| || |
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| T |
43480067 |
tcaataccttgaacggaaattctaccgtcggtgtaaatatcaggatcaaacaaataagcagaagaatcaccgtgaccaaatttaacagaaccgtcagatt |
43480166 |
T |
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| Q |
318 |
cctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattatacatactctcttccgtttgatactcagg |
417 |
Q |
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| T |
43480167 |
cctgagcaacaaccttatggggcaaacgcaacgtatcataactaattttcccaaatcttctaacggcgttatacatactctcctcagtttgatactcagg |
43480266 |
T |
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| Q |
418 |
gataatatggtaatacattatctcctccggtgaacccggttc |
459 |
Q |
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|| ||||| || || || |||| ||||||| ||| ||||| |
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| T |
43480267 |
aattatatgatagtatataatctgttccggtgcacctggttc |
43480308 |
T |
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