View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_24 (Length: 324)
Name: NF15773_low_24
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 6180085 - 6180000
Alignment:
| Q |
54 |
ctattcacctcaacaaacttccttcaccttgtcacaagaatatcttatacatcaaaaaccatcatcttatcagtctaaaaaccatc |
139 |
Q |
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| T |
6180085 |
ctattcacctcaacaaacttccttcaccttgtcatgataatatctttttcatcaaaacccatcatcttatcagtctaaaaaccatc |
6180000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 6181410 - 6181372
Alignment:
| Q |
20 |
ctagacctttaatattaatagatcctataatcatctatt |
58 |
Q |
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| T |
6181410 |
ctagacccttaatattattagatcctataatcatctatt |
6181372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 6221585 - 6221547
Alignment:
| Q |
20 |
ctagacctttaatattaatagatcctataatcatctatt |
58 |
Q |
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| T |
6221585 |
ctagacccttaatattattagatcctataatcatctatt |
6221547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 29832081 - 29832021
Alignment:
| Q |
192 |
tgatgtttgtttttattttgatattatagcatag-attatgttaaagcacctagcaaacta |
251 |
Q |
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| T |
29832081 |
tgatgattgttttgtttttgatattatagcatagaattatgttaaatcacctagcaaacta |
29832021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 17304928 - 17304882
Alignment:
| Q |
198 |
ttgtttttattttgatattatagcatagattatgttaaagcacctag |
244 |
Q |
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| T |
17304928 |
ttgtttttattttggtagtatagcataaactatgttaaagcacctag |
17304882 |
T |
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