View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_25 (Length: 321)
Name: NF15773_low_25
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 45671670 - 45671911
Alignment:
| Q |
15 |
catcaagagtttaaatacaaagggtcaaccatgtttaggctccgttccttctcattcaagacaagctgtaccagaagacacgagaagtttatagacaaac |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45671670 |
catcaagagtttaaagacaaagggtcaaccatgtttaggctccgttccttctcattcaagacaagctgtaccagaagacacgagaagtttatagacaaac |
45671769 |
T |
|
| Q |
115 |
acatttgttcttattcttcataacgcagacaaaaacccatctaaatacgtgtcatttatccaaatctgtactctttgcagccacataattcatggtgtgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45671770 |
acatttgttcttattcttcataacgcagacaaaaacccatctaaatacgtgtcatttatccaaatctgtaatctttgcagccacataattcatggtgtgg |
45671869 |
T |
|
| Q |
215 |
acaccaccaaagcatcaactgtgactgattttgattcttgtg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45671870 |
acaccaccaaagcatcaactgtgactgattttgattcttgtg |
45671911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 45671909 - 45671941
Alignment:
| Q |
269 |
gtgtgtatcagtgtacataccagtttgcttaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45671909 |
gtgtgtatcagtgtacataccagtttgcttaca |
45671941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University