View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_27 (Length: 307)

Name: NF15773_low_27
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_27
NF15773_low_27
[»] scaffold0299 (2 HSPs)
scaffold0299 (11-290)||(13957-14237)
scaffold0299 (12-290)||(19515-19794)
[»] chr6 (2 HSPs)
chr6 (12-290)||(6773983-6774260)
chr6 (228-290)||(6680196-6680258)
[»] chr1 (4 HSPs)
chr1 (12-228)||(40136820-40137037)
chr1 (225-290)||(18136285-18136350)
chr1 (32-77)||(4578684-4578729)
chr1 (34-72)||(11430471-11430509)
[»] chr5 (11 HSPs)
chr5 (225-287)||(36847432-36847494)
chr5 (225-290)||(6161887-6161952)
chr5 (13-80)||(40699486-40699553)
chr5 (13-66)||(41746187-41746240)
chr5 (34-76)||(18237245-18237287)
chr5 (42-72)||(25710584-25710614)
chr5 (225-287)||(36858699-36858761)
chr5 (12-81)||(1248986-1249055)
chr5 (32-72)||(24915170-24915210)
chr5 (32-72)||(24991001-24991041)
chr5 (41-77)||(27726832-27726868)
[»] chr3 (3 HSPs)
chr3 (225-289)||(46522623-46522687)
chr3 (225-290)||(49882246-49882311)
chr3 (37-72)||(38928039-38928074)
[»] chr2 (7 HSPs)
chr2 (32-78)||(21447213-21447259)
chr2 (34-72)||(15508944-15508982)
chr2 (37-72)||(1110231-1110266)
chr2 (34-72)||(1110313-1110351)
chr2 (34-76)||(37285224-37285266)
chr2 (37-77)||(24895297-24895337)
chr2 (36-76)||(37195237-37195276)
[»] chr8 (5 HSPs)
chr8 (37-77)||(44709304-44709344)
chr8 (34-85)||(35188454-35188505)
chr8 (37-77)||(12212155-12212195)
chr8 (37-77)||(12456583-12456623)
chr8 (37-77)||(34483208-34483248)
[»] scaffold0147 (1 HSPs)
scaffold0147 (34-98)||(28385-28449)
[»] chr7 (1 HSPs)
chr7 (43-72)||(25428591-25428620)
[»] chr4 (1 HSPs)
chr4 (37-77)||(49738954-49738994)


Alignment Details
Target: scaffold0299 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 14237 - 13957
Alignment:
Q  11 cagagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatacttcgaaaatgagtccataaatggtcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14237 cagagaaatgctaggaacgatcactttctaacactcactcttttattgtatgaaatcaatgtgggtctcatgcttcgaaaatgagtccataaatggtcaa 14138  T
Q  111 acccacattattttcatccaataagagagtgggtgcaggagagaatgttgaaccc-nnnnnnnnngtattagaaagaggatgttcatagcacactcatca 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||          ||||||||||||||||||||||||||||||| |||    
T  14137 acccacattattttcatccaataagagagtgggtacaggagagaatgttgtacccaaaaaaaaaagtattagaaagaggatgttcatagcacactcgtca 14038  T
Q  210 caatattacaaacaacatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14037 caatattacaaactacatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 13957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 19794 - 19515
Alignment:
Q  12 agagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatacttcgaaaatgagtccataaatggtcaaa 111  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19794 agagaaatgctaggaacgatcactttctaactctcacttttttattttgtgaaatcaatgtgggtctcattcttcgaaaatgagtccataaatggtcaaa 19695  T
Q  112 cccacattattttcatccaataagagagtgggtgcaggagagaatgttgaaccc-nnnnnnnnngtattagaaagaggatgttcatagcacactcatcac 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||          ||||||||||||||||||||||| ||||||||||||    
T  19694 cccacattattttcatccaataagagagtgggtacaggagagaatgttgtacccaaaaaaaaaagtattagaaagaggatgttcataacacactcatcac 19595  T
Q  211 aatattacaaacaacatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19594 aatattacaaactccatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 19515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 6773983 - 6774260
Alignment:
Q  12 agagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatacttcgaaaatgagtccataaatggtcaaa 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6773983 agagaaatgctaggaacgatcactttctaaccctcactcttttattatgtgaaatcaatgtgggtctcatacttcgaaaatgagtccataaatggtcaaa 6774082  T
Q  112 cccacattattttcatccaataagagagtgggtgcaggagagaatgttgaacccnnnnnnnnngtattagaaagaggatgttcatagcacactcatcaca 211  Q
    || ||||||||||||||||||||| |||||  | |  |||||||||||| | ||         |||||||||||||| |||||||||||| |||||||||    
T  6774083 ccaacattattttcatccaataagggagtgaatactagagagaatgttgtatcc-aaaaaaaagtattagaaagaggttgttcatagcactctcatcaca 6774181  T
Q  212 atattacaaacaacatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    ||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  6774182 atattacaaactacacagcattaccgcaccagcggtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 6774260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 6680258 - 6680196
Alignment:
Q  228 agcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6680258 agcattactgcaccaccagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 6680196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 40137037 - 40136820
Alignment:
Q  12 agagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatacttcgaaaatgagtccataaatggtcaaa 111  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  40137037 agagaaatgctaggaaggatcactttctaacactcactcttttattgtgtgaaatcaacgtgggtctcatactttgaaaatgagtccataaatggtcaaa 40136938  T
Q  112 cccacattattttcatccaataagagagtgggtgcaggagagaatgttgaaccc-nnnnnnnnngtattagaaagaggatgttcatagcacactcatcac 210  Q
    ||||||| |||||||| | |||||| |||| || |  |||||||||||| ||||          |||||||||||||  ||||| |||||| ||||||||    
T  40136937 cccacatgattttcattccataagaaagtgagtactagagagaatgttgtacccaaaaatatatgtattagaaagagattgttcgtagcactctcatcac 40136838  T
Q  211 aatattacaaacaacata 228  Q
    |||||||||||| |||||    
T  40136837 aatattacaaactacata 40136820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 18136350 - 18136285
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18136350 catagcattactgcaccagcagtctccatcaaagtatgacaaacgagaagctgtcaccttggagtt 18136285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 4578729 - 4578684
Alignment:
Q  32 cactttctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  4578729 cactctctaacactcactcttttattgggtgaaatcaatgtaggtc 4578684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 11430471 - 11430509
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  11430471 ctttctagcactcactcttttattgggtgaaatcaatgt 11430509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 36847432 - 36847494
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttgga 287  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  36847432 catagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttgga 36847494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 6161887 - 6161952
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    |||||||||||| |||| ||||||||| ||||||| |||||||| | |||||||||||||||||||    
T  6161887 catagcattaccacaccagcagtctccttcaaagtgtggcaaacaaaaagctgtcaccttggagtt 6161952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40699486 - 40699553
Alignment:
Q  13 gagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctca 80  Q
    ||||||||||||||||  || |||||||||||||||| | |||||| |||||| | ||||||||||||    
T  40699486 gagaaatgctaggaacactctctttctaacactcactttcttattgggtgaaacccatgtgggtctca 40699553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 41746240 - 41746187
Alignment:
Q  13 gagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaat 66  Q
    ||||||||||| ||||  || ||||||||||||||||||||||||| |||||||    
T  41746240 gagaaatgctatgaacattctctttctaacactcactcttttattgagtgaaat 41746187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 18237287 - 18237245
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgtgggt 76  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  18237287 ctttctaacactcactcttttattgggtgaaattcatgtgggt 18237245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 25710614 - 25710584
Alignment:
Q  42 cactcactcttttattgtgtgaaatcaatgt 72  Q
    |||||||||||||||||||||||||||||||    
T  25710614 cactcactcttttattgtgtgaaatcaatgt 25710584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 36858699 - 36858761
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttgga 287  Q
    ||||||||| | ||||| |||||||||   |||| ||||||||||||||||| ||||||||||    
T  36858699 catagcattcctgcaccagcagtctcccataaagcatggcaaacgagaagctatcaccttgga 36858761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 1248986 - 1249055
Alignment:
Q  12 agagaaatgctaggaacgatcactttctaacactcactcttttattgtgtgaaatcaatgtgggtctcat 81  Q
    ||||||||| |||||||  ||  ||||||||||||||| ||||||||  ||||||| ||||| |||||||    
T  1248986 agagaaatgataggaacactctttttctaacactcactattttattggatgaaatccatgtgagtctcat 1249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 24915210 - 24915170
Alignment:
Q  32 cactttctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    |||| |||| ||||||||||||||||| |||||||||||||    
T  24915210 cactctctagcactcactcttttattgggtgaaatcaatgt 24915170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 24991041 - 24991001
Alignment:
Q  32 cactttctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    |||| |||| ||||||||||||||||| |||||||||||||    
T  24991041 cactctctagcactcactcttttattgggtgaaatcaatgt 24991001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 27726832 - 27726868
Alignment:
Q  41 acactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  27726832 acactcactcttttattgggtgaaattaatgtgggtc 27726868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 46522687 - 46522623
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagt 289  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46522687 catagcattaccagaccagcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagt 46522623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 49882311 - 49882246
Alignment:
Q  225 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttggagtt 290  Q
    |||| ||| |||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||    
T  49882311 cataacataaccgcaccagtagtctccatcaaagtatggcaatcgagaagttgtcaccttggagtt 49882246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 38928039 - 38928074
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    |||||||||||||||||||||| |||||||||||||    
T  38928039 tctaacactcactcttttattgggtgaaatcaatgt 38928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 21447259 - 21447213
Alignment:
Q  32 cactttctaacactcactcttttattgtgtgaaatcaatgtgggtct 78  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  21447259 cactctctaacacccactcttttattgtgtgaaatcaatgtgggtct 21447213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 15508944 - 15508982
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  15508944 ctttctaacactcactcttttattgagtgaaatcaatgt 15508982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 1110231 - 1110266
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    |||||||||||||||||||||| |||||||||||||    
T  1110231 tctaacactcactcttttattgagtgaaatcaatgt 1110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 1110351 - 1110313
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgt 72  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  1110351 ctttctaacattcactcttttattgggtgaaatcaatgt 1110313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 37285266 - 37285224
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgtgggt 76  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  37285266 ctttctaacactcactcttttattgggtgaaattcatgtgggt 37285224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 24895297 - 24895337
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    ||||||||||||||||| |||| || |||||||||||||||    
T  24895297 tctaacactcactctttcattgggttaaatcaatgtgggtc 24895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 37195237 - 37195276
Alignment:
Q  36 ttctaacactcactcttttattgtgtgaaatcaatgtgggt 76  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  37195237 ttctaacactcactcttttatt-tatgaaatcaatgtgggt 37195276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 44709304 - 44709344
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  44709304 tctaacactcactcttttattgtgtgaaatcaatgtaggtc 44709344  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 35188505 - 35188454
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatactt 85  Q
    |||||||||||||||||| |||| | ||||||| ||||||||||||| ||||    
T  35188505 ctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactt 35188454  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 12212155 - 12212195
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  12212155 tctaacattcactcttttcttgggtgaaatcaatgtgggtc 12212195  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 12456583 - 12456623
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  12456583 tctaacattcactcttttcttgggtgaaatcaatgtgggtc 12456623  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 34483208 - 34483248
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  34483208 tctaacactcactcttttatttggttaaatcaatgtgggtc 34483248  T

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Target: scaffold0147 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 28449 - 28385
Alignment:
Q  34 ctttctaacactcactcttttattgtgtgaaatcaatgtgggtctcatacttcgaaaatgagtcc 98  Q
    ||||| ||||| |||||| |||||| |||||||||||||||||| || |||| ||||||| ||||    
T  28449 ctttccaacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcc 28385  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 25428620 - 25428591
Alignment:
Q  43 actcactcttttattgtgtgaaatcaatgt 72  Q
    ||||||||||||||||||||||||||||||    
T  25428620 actcactcttttattgtgtgaaatcaatgt 25428591  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 49738954 - 49738994
Alignment:
Q  37 tctaacactcactcttttattgtgtgaaatcaatgtgggtc 77  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  49738954 tctaacactcactcttttatttggtgaaatccatgtgggtc 49738994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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