View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_29 (Length: 304)

Name: NF15773_low_29
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_29
NF15773_low_29
[»] chr2 (12 HSPs)
chr2 (1-240)||(34342512-34342751)
chr2 (1-240)||(31846760-31846999)
chr2 (1-224)||(38295332-38295556)
chr2 (1-240)||(40829902-40830140)
chr2 (59-240)||(9731271-9731451)
chr2 (17-240)||(18727235-18727458)
chr2 (137-226)||(32294259-32294348)
chr2 (142-193)||(24026204-24026255)
chr2 (137-193)||(37810531-37810587)
chr2 (137-204)||(30850788-30850855)
chr2 (137-210)||(18899556-18899629)
chr2 (137-183)||(2308396-2308442)
[»] chr4 (19 HSPs)
chr4 (1-183)||(46286979-46287162)
chr4 (1-193)||(32890145-32890336)
chr4 (17-236)||(33139079-33139299)
chr4 (1-235)||(24966090-24966324)
chr4 (17-192)||(29509703-29509877)
chr4 (17-240)||(46862538-46862747)
chr4 (110-224)||(50517492-50517606)
chr4 (106-198)||(35518144-35518236)
chr4 (1-138)||(53574002-53574138)
chr4 (215-283)||(46287147-46287215)
chr4 (167-240)||(26490869-26490942)
chr4 (137-198)||(25842618-25842679)
chr4 (137-236)||(40317269-40317368)
chr4 (137-236)||(40327343-40327442)
chr4 (137-203)||(26955682-26955748)
chr4 (99-139)||(17503464-17503504)
chr4 (18-60)||(17503527-17503569)
chr4 (137-183)||(29469538-29469584)
chr4 (153-189)||(4511598-4511634)
[»] chr1 (18 HSPs)
chr1 (1-231)||(25253796-25254029)
chr1 (1-236)||(32759698-32759933)
chr1 (38-240)||(49452653-49452854)
chr1 (1-240)||(49236590-49236829)
chr1 (1-240)||(47371162-47371401)
chr1 (18-240)||(42303973-42304196)
chr1 (1-231)||(3593505-3593735)
chr1 (39-232)||(35176868-35177062)
chr1 (110-240)||(28403571-28403703)
chr1 (1-183)||(48966155-48966322)
chr1 (149-240)||(19863274-19863365)
chr1 (137-211)||(226316-226390)
chr1 (142-227)||(46042298-46042383)
chr1 (137-183)||(5208934-5208980)
chr1 (137-210)||(1242934-1243007)
chr1 (137-183)||(11578780-11578826)
chr1 (137-183)||(41353816-41353862)
chr1 (142-227)||(42637749-42637835)
[»] chr6 (9 HSPs)
chr6 (1-235)||(16438970-16439203)
chr6 (1-240)||(2607176-2607415)
chr6 (1-210)||(33640896-33641104)
chr6 (9-240)||(28900424-28900659)
chr6 (18-232)||(24194757-24194971)
chr6 (9-203)||(31534728-31534907)
chr6 (1-108)||(31975365-31975472)
chr6 (137-227)||(21010521-21010610)
chr6 (144-203)||(15381209-15381268)
[»] chr7 (14 HSPs)
chr7 (1-236)||(16709806-16710041)
chr7 (1-236)||(17684042-17684277)
chr7 (2-228)||(43172335-43172561)
chr7 (1-240)||(23017267-23017491)
chr7 (1-240)||(21486419-21486644)
chr7 (104-234)||(42610883-42611013)
chr7 (1-193)||(5771755-5771946)
chr7 (161-240)||(31445773-31445852)
chr7 (137-227)||(6268851-6268941)
chr7 (137-198)||(1254154-1254215)
chr7 (137-210)||(14741826-14741899)
chr7 (137-183)||(4639554-4639600)
chr7 (168-242)||(42043744-42043817)
chr7 (174-226)||(33496988-33497040)
[»] chr3 (11 HSPs)
chr3 (9-240)||(4962303-4962534)
chr3 (1-240)||(43173171-43173410)
chr3 (1-240)||(49458639-49458873)
chr3 (1-240)||(33693534-33693773)
chr3 (71-240)||(7437142-7437310)
chr3 (40-240)||(21386081-21386281)
chr3 (1-113)||(16155417-16155529)
chr3 (137-227)||(30238175-30238264)
chr3 (1-60)||(7667177-7667236)
chr3 (137-176)||(9031707-9031746)
chr3 (137-183)||(53836333-53836379)
[»] chr5 (9 HSPs)
chr5 (1-192)||(34218700-34218890)
chr5 (51-240)||(29716494-29716683)
chr5 (136-193)||(36196018-36196075)
chr5 (137-201)||(15286126-15286190)
chr5 (150-227)||(31913805-31913883)
chr5 (137-224)||(5650412-5650499)
chr5 (1-60)||(29758973-29759036)
chr5 (137-183)||(28622848-28622894)
chr5 (99-135)||(29759077-29759113)
[»] chr8 (24 HSPs)
chr8 (1-210)||(42423474-42423682)
chr8 (1-240)||(27878204-27878443)
chr8 (1-240)||(28018385-28018624)
chr8 (41-233)||(12737683-12737875)
chr8 (4-240)||(27915148-27915384)
chr8 (4-240)||(27961567-27961803)
chr8 (2-240)||(12521998-12522236)
chr8 (63-240)||(27974560-27974737)
chr8 (63-240)||(28031829-28032006)
chr8 (17-235)||(44977016-44977233)
chr8 (1-240)||(8029446-8029668)
chr8 (110-240)||(27869530-27869662)
chr8 (17-183)||(6387748-6387914)
chr8 (110-236)||(3007407-3007532)
chr8 (127-240)||(24082593-24082706)
chr8 (1-68)||(41394209-41394276)
chr8 (137-210)||(33177492-33177565)
chr8 (175-240)||(6387494-6387559)
chr8 (2-81)||(27974740-27974819)
chr8 (2-81)||(28032009-28032088)
chr8 (137-193)||(4870785-4870842)
chr8 (175-240)||(41394306-41394371)
chr8 (137-183)||(19484588-19484634)
chr8 (18-91)||(3007536-3007609)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-240)||(89552-89792)
[»] scaffold0573 (1 HSPs)
scaffold0573 (9-240)||(9135-9370)
[»] scaffold0118 (1 HSPs)
scaffold0118 (142-189)||(38242-38289)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34342512 - 34342751
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || |    
T  34342512 tttttctttcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgacgctggtaa 34342611  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  34342612 ttgcgacgtcggttagggttgtggtggtggtgtttgttgaccttttcaagaaattaactagtttattttttagatagttttattaacaactttgaaaact 34342711  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| |||||||||| ||||||| |||||||||    
T  34342712 tgtgaaacttgctattttggatagttttatagatggctta 34342751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31846999 - 31846760
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| | ||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||| ||| |||||||| | ||||| || || ||||    
T  31846999 tttttcttttttctctgagttctcaaaccataaacaggggagcacataccagttagggttgcgattccgacgatggaaatttagatttcaacgccagtga 31846900  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||    
T  31846899 ttgcgacgcttgttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaact 31846800  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||| ||||||| | |||| |||||||||||||||| ||||    
T  31846799 tgcaaaacttgcttttttagatggttttatggatgactta 31846760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38295556 - 38295332
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||| || |||||||||||||||||||   | ||||    
T  38295556 tttttctttcttctctgagttctcaaaccataaacaggggagcacataccagttagggttgcgattccgactgtggaaattcatatttcgatgtcggtga 38295457  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgacc-ttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaac 199  Q
    ||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||     
T  38295456 ttgtgacgccggttagggttgcggtggtggtgtttgctgacctttttgaagaaattaactagtttattttttagatagttttattagcaactttaggaat 38295357  T
Q  200 ttgcgaaacttgatattttggatgg 224  Q
    ||| |||||||  | ||||||||||    
T  38295356 ttgtgaaactttcttttttggatgg 38295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40829902 - 40830140
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||||||||||||||||| | |||||||  ||||||||||||||||||||   |||||||||||||| ||||| || |   |||    
T  40829902 tttttctttcttctctaagttctcaaaccatgaacaggggagcatgtaccagttagggttgcgattttgacggtggaaattcagatttccacgctgatga 40830001  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| | | ||||    
T  40830002 ttgcgacg-cggttagggttgcagtggtagtgtttgttgaccttttgaagaaattaactagtttatgttttagatggttttattaacaactataggaact 40830100  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | ||||||||| ||||||||||| ||||    
T  40830101 tgtgaaacttgcttttttggatgattttatggatgactta 40830140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 9731271 - 9731451
Alignment:
Q  59 ttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaac 158  Q
    |||||||||| ||| |||||||||| |||| |||  |  ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||     
T  9731271 ttgcgattccgacgatggaaattcagattttgacgtcgatgattgcgacgccgattagggttgcggtggtggtgtttgttgaccttttgaagaaattaat 9731370  T
Q  159 tagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||||||||||||||||| ||||||||| | || ||| |||||||| | ||||||||||||||||||||| ||||    
T  9731371 tagtttattttttagatagttttattaacaactttagtaatttgtgaaacttg-ttttttggatggttttatggatgactta 9731451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 18727458 - 18727235
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    ||||||| |||||||||| ||| |||||||||||| |||||||||||||||| | || | |||||   ||| |||| ||  |||||| ||||  |||| |    
T  18727458 gagttcttaaaccatgaacaagagagcacataccaattagggttgcgattccgatggggtaaatttcgattgcgacaccgatgattgtgacgctggttgg 18727359  T
Q  117 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatatt 216  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||  |||||||||| |||||||||   |||||| ||| |||| | ||    
T  18727358 ggttgcggtggtggtgtttgacgaccttttgaagaaattaactagttgattttttgaatagttttattaacaactttacgaacttgtgaaccttgctttt 18727259  T
Q  217 ttggatggttttatggatggctta 240  Q
    |||||||||||||| |||| ||||    
T  18727258 ttggatggttttatagatgactta 18727235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 32294259 - 32294348
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggtt 226  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||| |||||||| | ||||||||||||    
T  32294259 ttgatcttttgaagaaattaactagtttattttttggatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtt 32294348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 24026204 - 24026255
Alignment:
Q  142 cttttgaagaaattaactagtttattttttagatagttttatcaacaacttt 193  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  24026204 cttttgaagaaattaactagtttattttttggatagttttattaacaacttt 24026255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 37810587 - 37810531
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaacttt 193  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  37810587 ttgaacttttgaagaaattaactagtttattttttggataggtttattaacaacttt 37810531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 30850788 - 30850855
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcg 204  Q
    |||| |||||||| ||||||||| | ||||||| | ||||||||||| ||||||||| ||||||||||    
T  30850788 ttgaacttttgaataaattaacttggttattttatggatagttttattaacaactttagaaacttgcg 30850855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 18899629 - 18899556
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaactt 210  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||   ||| ||| |||||||| |||||||    
T  18899629 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 18899556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 2308442 - 2308396
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||||||    
T  2308442 ttgaccttttgaagaaattatttagtttattttttggataattttat 2308396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 46286979 - 46287162
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  46286979 tttttctttcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacgatggaaattcaaatttcgactcccgtga 46287078  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagttta-ttttttagatagttttat 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46287079 ttgcgacgtcggttagggttgcggtggtgatgtttgttgaccttttgaagaaattaactagtttatttttttagatagttttat 46287162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 32890145 - 32890336
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||| | ||||| |||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||||  | ||||    
T  32890145 tttttctttcttccctgagttttcaaaccatgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcatatttcgacgtcggtga 32890243  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaacttt 193  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32890244 ttgcgacgccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaacttt 32890336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 33139079 - 33139299
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    |||||||||||| | ||| | ||||||| |||||| ||||||||| |||||| |||||||||||||| |||||||||||  ||||||| ||| |||||||    
T  33139079 gagttctcaaactaagaacatgggagcagataccaattagggttgtgattccgacggtggaaattcagatttcgactccgatgattgcaacgccggttag 33139178  T
Q  117 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagttta-ttttttagatagttttatcaacaactttggaaacttgcgaaacttgatat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||| |||||||| |||    
T  33139179 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttatttttttagatagttttattaacaactttaggaacttgtgaaacttgctat 33139278  T
Q  216 tttggatggttttatggatgg 236  Q
    |||||||||||||||| ||||    
T  33139279 tttggatggttttatgcatgg 33139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24966324 - 24966090
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||| ||| | ||||| |||||||| |||||||||||||| | |||||||||| | | |||||||| || | ||    
T  24966324 tttttctttcttctctgagttctcaaaccacgaacatgggagtacataccaattagggttgcgatttcgacggtggaaacttagatttcgacgccggaga 24966225  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||    
T  24966224 ttgcaatgccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttgttttttagatagttttattaacaactttaggaact 24966125  T
Q  201 tgcgaaacttgatattttggatggttttatggatg 235  Q
    || |||||||| | |||||||||||||||||||||    
T  24966124 tgtgaaacttgtttttttggatggttttatggatg 24966090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 29509877 - 29509703
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    ||||| |||||||||||| | |||||||| ||||||||| |||||| |||||||||||||||||||| | ||| || || |||||||||||| | |||||    
T  29509877 gagttttcaaaccatgaacatgggagcacgtaccagttatggttgc-attccaacggtggaaattcagagttcaacgccggtgattgcgacgccagttag 29509779  T
Q  117 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  29509778 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactggtttattttttagatagttttattaacaactt 29509703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 46862747 - 46862538
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||               |||||||||    
T  46862747 gagttctcaaaccatgaacaggggagcacatactagttagggttgcgattccgacggtagaaattcagatttcgac---------------gtcggttag 46862663  T
Q  117 ggttgcggtggtggtgtttgttgacctttt-gaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatat 215  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||   |||||| |||||||| | |    
T  46862662 ggttgcggtggtagtgtttgttgacctttttgaagaaattaactagtttattttttagatagttttattaacaactttaagaacttgtgaaacttgcttt 46862563  T
Q  216 tttggatggttttatggatggctta 240  Q
    |||||||| ||||||||||| ||||    
T  46862562 tttggatgattttatggatgactta 46862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 50517492 - 50517606
Alignment:
Q  110 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaact 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| | |||||| |||| |    
T  50517492 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatggatttattaacaactttaggaacttgtgaaatt 50517591  T
Q  210 tgatattttggatgg 224  Q
    || | ||||||||||    
T  50517592 tgcttttttggatgg 50517606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 35518236 - 35518144
Alignment:
Q  106 acgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaa 198  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||    
T  35518236 acgtcggttagggttgcggtggtggtatttgttgaccttttgaagaaattaactagtttatttattgaatagttttattaacaactttagaaa 35518144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 53574138 - 53574002
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | || |||| |||||||||||||||  |||||| |||||||||||||  ||||||||     |||    
T  53574138 tttttctttcttctctgagttctcaaaccatgaacagggtagcatataccagttagggttctgattccgacggtggaaattccgatttcgacattgttga 53574039  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgtt 138  Q
    |||| ||| |||||| ||||||||||||||||||||||    
T  53574038 ttgctacgccggtta-ggttgcggtggtggtgtttgtt 53574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 46287147 - 46287215
Alignment:
Q  215 ttttggatggttttatggatggcttagaccgacgagacttaagataaacatataaattatagttcccgt 283  Q
    |||| ||| ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  46287147 ttttagatagttttatggatggcttagacttatgagacttaagataaacatataaattatagttcccgt 46287215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 26490942 - 26490869
Alignment:
Q  167 tttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||||||||| ||||||||| | |||||| |||||||| | ||||||||||||||||||||| ||||    
T  26490942 tttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgactta 26490869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 25842679 - 25842618
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaa 198  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||    
T  25842679 ttgatcttttgaagaaattaactagtttattttttggatagctttattaacaactttagaaa 25842618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 40317368 - 40317269
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatgg 236  Q
    |||| |||||||||||||||||||||| |||||||  |||| ||||| || |||||| |||||||  |||||||| | ||| |||||||| | |||||||    
T  40317368 ttgatcttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaacttggtttttcggatggttctttggatgg 40317269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 40327442 - 40327343
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatgg 236  Q
    |||| |||||||||||||||||||||| |||||||  |||| ||||| || |||||| |||||||  |||||||| | ||| |||||||| | |||||||    
T  40327442 ttgatcttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaacttggtttttcggatggttctttggatgg 40327343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 26955682 - 26955748
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
    |||| |||||||||||||||| | ||||||||||| ||||||||||| || |||||| |||||||||    
T  26955682 ttgaacttttgaagaaattaaattgtttattttttggatagttttattaaaaactttagaaacttgc 26955748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 17503504 - 17503464
Alignment:
Q  99 gattgcgacgtcggttagggttgcggtggtggtgtttgttg 139  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  17503504 gattgcgaagccggttagggttgcggtggtggtgtttgttg 17503464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 17503569 - 17503527
Alignment:
Q  18 agttctcaaaccatgaataagggagcacataccagttagggtt 60  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  17503569 agttctcaaaccatgaacatgggagcacataccaattagggtt 17503527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 29469538 - 29469584
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  29469538 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 29469584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 4511634 - 4511598
Alignment:
Q  153 attaactagtttattttttagatagttttatcaacaa 189  Q
    |||||||||||||||||||||||| |||||| |||||    
T  4511634 attaactagtttattttttagataattttattaacaa 4511598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25253796 - 25254029
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||| | |||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||    
T  25253796 tttttctttctttttcgagttctcaaaccttgaataagggagtacataccggttagggttgcgaatccaacggtggaaattcatatttcgacgccggtga 25253895  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagt---ttattttttagatagttttatcaacaactttggaa 197  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  25253896 ttgcgacgtcaaatagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattattttttagatagttttattaacaactttggaa 25253995  T
Q  198 acttgcgaaacttgatattttggatggttttatg 231  Q
    ||||| |||||||| |||||| ||||||||||||    
T  25253996 acttgagaaacttgttatttttgatggttttatg 25254029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32759933 - 32759698
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||||| || ||||    
T  32759933 tttttctttcttctctgagttctcaaaccatgaacaagggagcacatatcagttagggttgcgattccgacggtgaaaattcagatttcgacgccggtga 32759834  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||   ||||    
T  32759833 ttgcgacatcggttagggttgcgggggtggtgtttgttgaccatttgaagaaattaactagtttattttttagatagttttattaacaattttttgaact 32759734  T
Q  201 tgcgaaacttgatattttggatggttttatggatgg 236  Q
    ||  ||||||| | ||||||||||||||||||||||    
T  32759733 tgtaaaacttggttttttggatggttttatggatgg 32759698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 49452854 - 49452653
Alignment:
Q  38 gggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||  | ||||||||| ||||||||||||||||||| ||||||||    
T  49452854 gggagcatataccagttagggttgcgattccaacggtggaaagtcatatttcgacgccgtttattgcgacgccggttagggttgcggtggtagtgtttgt 49452755  T
Q  138 tgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggc 237  Q
    || | ||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||| |||||||| | ||||||||||||||||||||| |    
T  49452754 tgtcgttttgaagaaattaactagtttattttttagatagttttattaacaaatttaggaacttgtgaaacttg-ttttttggatggttttatggatgac 49452656  T
Q  238 tta 240  Q
    |||    
T  49452655 tta 49452653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49236829 - 49236590
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||||||||||||||||| | |||||||||||||| |||||||||||||| | |||||| ||||||| ||||||||  |  |||    
T  49236829 tttttctttcttctctaagttctcaaaccatgaacatgggagcacataccaattagggttgcgatttcgacggtgaaaattcagatttcgacgtcgatga 49236730  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||| |||  ||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||    
T  49236729 ttgcaacgctggttatggttgctgtggtggtatttgttgaccttttaaagaaattaactagtttattttttagatagttttattaacaactttaggaact 49236630  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    |  |||||||  | ||||||||||||||||||||||||||    
T  49236629 tatgaaactttcttttttggatggttttatggatggctta 49236590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47371401 - 47371162
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||| ||| | |||||||||||||| |||||||||| ||| | |||||||||| | | |||||||| || ||||    
T  47371401 tttttctttcttctctgagttctcaaaccacgaacatgggagcacataccaattagggttgcaatttcgacggtggaaacttagatttcgacgccggtga 47371302  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||| | | |||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||   ||||    
T  47371301 ttgcaatgccggttagggttgtggcggtggtgttcgttgaccttttgaagaaattaactagtttgttttttagattgttttattaacaactttaagaact 47371202  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | ||||||||||||||||||||| ||||    
T  47371201 tgtgaaacttgcttttttggatggttttatggatgactta 47371162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 42304196 - 42303973
Alignment:
Q  18 agttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagg 117  Q
    ||||||||||||||||| | |||||||||||||| ||||||||| |||||  |||||||||||||||||||| || || ||||||| |||   |||||||    
T  42304196 agttctcaaaccatgaacaggggagcacataccatttagggttgtgattcagacggtggaaattcatatttcaacgccggtgattgtgacactggttagg 42304097  T
Q  118 gttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaac-ttgatatt 216  Q
    ||||  |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||| | |||||| ||||| ||  | ||    
T  42304096 gttgttgtggtggtgtttgttgacgttttgaagaaattaactactttattttttagatagttttattaataactttaggaacttgtgaaactttcttttt 42303997  T
Q  217 ttggatggttttatggatggctta 240  Q
    ||||||||||||||||||||||||    
T  42303996 ttggatggttttatggatggctta 42303973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3593505 - 3593735
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||||||||| ||||||||| ||||||||||| ||||||| |||| |||||  || ||||||||||| |||||||| ||  |||    
T  3593505 tttttctttcttctctaagttctcaatccatgaataggggagcacatatcagttagtgttgtgattctgacagtggaaattcagatttcgacgccaatga 3593604  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||    |||    
T  3593605 ttgcgacaccggttagggttgcggtgttggtgtttgtttaccttttgaagaaattaacaagtttattttttagatagttttattaacaactttacggact 3593704  T
Q  201 tgcgaaacttgatattttggatggttttatg 231  Q
    || |||||||  | |||||||||||||||||    
T  3593705 tgtgaaacttacttttttggatggttttatg 3593735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 35177062 - 35176868
Alignment:
Q  39 ggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgtt 138  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||  | |||||||||||| ||||||||||| || ||||||||||||||    
T  35177062 ggagcgcataccagtgagggttgcgattccgacggtggaaattcagatttcgacgtcggtgattgcgacgccggttagggttacgttggtggtgtttgtt 35176963  T
Q  139 gaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttg-atattttggatggttttatgg 232  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||| |||||| ||   |||||| ||||||||  | ||||||||||||||||||    
T  35176962 gaccttttgaagaaattcactaatttaatttttagatagttttattaacaacattatgaacttgtgaaacttgctttttttggatggttttatgg 35176868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 28403703 - 28403571
Alignment:
Q  110 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaact 209  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||||| ||||||    
T  28403703 cggttaggattgcggtagtggtgtttgttgaccttttgaagaaattaactagtttattttttaaatagttttattaacaactttaggaacttgtgaaact 28403604  T
Q  210 tga--tattttggatggttttatggatggctta 240  Q
    |||  | ||||||||||||||||||||| ||||    
T  28403603 tgattttttttggatggttttatggatgactta 28403571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 48966322 - 48966155
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||||||||||||||||| | |||||||||||| ||||| |||||| ||||| |||||||||||||| |||||||| ||         
T  48966322 tttttctttcttctctaagttctcaaaccatgaacatgggagcacatactagttatggttgcaattccgacggtggaaattcaaatttcgacacc----- 48966228  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
              | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48966227 ----------gattagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttat 48966155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 19863274 - 19863365
Alignment:
Q  149 agaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| | ||||||||||||||||||||| ||||    
T  19863274 agaaatttactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgactta 19863365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 226316 - 226390
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttg 211  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||||    
T  226316 ttgaacttttgaaaaaattaactagtttattttttagataggtttattaacaactttagaaacttatgaaacttg 226390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 46042298 - 46042383
Alignment:
Q  142 cttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttt 227  Q
    ||||||| |||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||| |||||||  | |||||||||||||    
T  46042298 cttttgacgaaattaactagtttattttttggataggtttattaacaactttagaaaattgtgaaacttacttttttggatggttt 46042383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 5208980 - 5208934
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||    
T  5208980 ttgaccttttgaagaaattacctagtttgttttttggatagttttat 5208934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 1243007 - 1242934
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaactt 210  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||   ||| ||| |||||||| |||||||    
T  1243007 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 1242934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 11578826 - 11578780
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  11578826 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 11578780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 41353816 - 41353862
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  41353816 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 41353862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 42637835 - 42637749
Alignment:
Q  142 cttttgaagaaattaactagtttatttttta--gatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttt 227  Q
    ||||||||||||||| ||||||| ||||||   |||| | |||| ||||||||| |||||||| | |||||| | |||||||||||||    
T  42637835 cttttgaagaaattagctagtttcttttttttggata-tgttattaacaactttagaaacttgtgcaacttgcttttttggatggttt 42637749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 16438970 - 16439203
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |  || ||||||||| | |||||||| || ||||    
T  16438970 tttttctttcttctcggagttctcaaaccatgaacatgggagcacataccagttagggttgcgat-ctgacagtggaaatttagatttcgacgccggtga 16439068  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  16439069 ttgcgacgttggttagggttgcagtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttagaaact 16439168  T
Q  201 tgcgaaacttgatattttggatggttttatggatg 235  Q
    || |||||||| | |||||||||||||||||||||    
T  16439169 tgtgaaacttgcttttttggatggttttatggatg 16439203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2607176 - 2607415
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||  |||||||||||||||||| | | |||||||||||||||||  |||||||||| |||||||||||||||||||||||  | ||||    
T  2607176 tttttctttcttctatgagttctcaaaccatgaacatgagagcacataccagttagcattgcgattccgacggtggaaattcatatttcgacatcggtga 2607275  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| ||||||    
T  2607276 ttgcgacgccggttagggttgtggtggtagtgtttgttgaccttttgaaaaaattaactagtttcttttttagatagtttttttaacaactttagaaact 2607375  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||  ||||||| | ||||||||| ||||||||||| ||||    
T  2607376 tgtaaaacttgcttttttggatgattttatggatgactta 2607415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33641104 - 33640896
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||| | ||||| |||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||  | ||||    
T  33641104 tttttctttcttccctgagttttcaaaccatgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcagatttcgacgtcggtga 33641006  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |    
T  33641005 ttgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaat 33640906  T
Q  201 tgcgaaactt 210  Q
    || |||||||    
T  33640905 tgtgaaactt 33640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 28900659 - 28900424
Alignment:
Q  9 tcttctccgagttctcaaaccatgaataagggagcacata----ccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgc 104  Q
    ||||||| |||||||||||||||||| | |||||||||||    ||||||||||||| |||| | |||||||||||||||||||| || ||  | |||||    
T  28900659 tcttctctgagttctcaaaccatgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgc 28900560  T
Q  105 gacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcg 204  Q
    |||  ||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |    
T  28900559 gacaccggttagggttgttgtggtagtgtttgttgtccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtg 28900460  T
Q  205 aaacttgatattttggatggttttatggatggctta 240  Q
    ||||||| | ||||||||||||||||| ||| ||||    
T  28900459 aaacttgcttttttggatggttttatgaatgactta 28900424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 24194757 - 24194971
Alignment:
Q  18 agttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagg 117  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||  | |||||| | ||   |||||||    
T  24194757 agttctcaaaccatgaacatgggagcatataccagttagggttgcgactccgacggtggaaattcatattttgacgtcggtgattacaacactggttagg 24194856  T
Q  118 gttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattt 217  Q
     |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | || ||| |||||||  | |||    
T  24194857 attgcggtggtggagtttgctgaccttttgaagaaattaactagtttattttttagatagttttaataacaactttaggaatttgtgaaactttcttttt 24194956  T
Q  218 tggatggttttatgg 232  Q
    |||||||||||||||    
T  24194957 tggatggttttatgg 24194971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 31534907 - 31534728
Alignment:
Q  9 tcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacg 108  Q
    ||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||                 
T  31534907 tcttctctgagttctcaaaccatgaacaagagagcacatatcagttagggttgcgatttcgacggtggaaattcagatttcgacgcc------------- 31534821  T
Q  109 tcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
      | |||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  31534820 --gattagggttgcggtcatggtgtttgttgatcttttgaagaaattaagtagtttatttcttagatagttttattaacaactttagaaacttgc 31534728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31975472 - 31975365
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || ||||    
T  31975472 tttttctttcttctctaagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgaaggtggaaattcatattttgacaccggtga 31975373  T
Q  101 ttgcgacg 108  Q
    || |||||    
T  31975372 ttacgacg 31975365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 21010610 - 21010521
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttt 227  Q
    |||| |||||||||||||||||||||||||  ||| ||||| || || ||||||||| |||||||| ||||||| || |||||||||||||    
T  21010610 ttgaacttttgaagaaattaactagtttataattttgataggttaattaacaactttagaaacttgtgaaactt-attttttggatggttt 21010521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 15381268 - 15381209
Alignment:
Q  144 tttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||| ||| |||||||||    
T  15381268 tttgaagaaattaacttgtttattttttggatagttttattaacaattttagaaacttgc 15381209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 16709806 - 16710041
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||  | ||||    
T  16709806 tttttctttcttctctgagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtga 16709905  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| | ||||    
T  16709906 ttgcgacaccagttagggttgcggtggtgatgtttgttgaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaact 16710005  T
Q  201 tgcgaaacttgatattttggatggttttatggatgg 236  Q
    || |||||||| | ||||||||||||||||||||||    
T  16710006 tgtgaaacttgcttttttggatggttttatggatgg 16710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17684042 - 17684277
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||  | ||||    
T  17684042 tttttctttcttctctgagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtga 17684141  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| | ||||    
T  17684142 ttgcgacaccagttagggttgcggtggtgatgtttgttgaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaact 17684241  T
Q  201 tgcgaaacttgatattttggatggttttatggatgg 236  Q
    || |||||||| | ||||||||||||||||||||||    
T  17684242 tgtgaaacttgcttttttggatggttttatggatgg 17684277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 43172335 - 43172561
Alignment:
Q  2 ttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgat 101  Q
    |||||| |||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||| ||  ||||    
T  43172335 ttttctttcttctctaagttctcaatccatgaataggggagcacataccagttagggttgcgattctgacgatggaaattcagatttcgacgccgatgat 43172434  T
Q  102 tgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaactt 201  Q
    ||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||    
T  43172435 tgcgacaccggttagggttgcggtggtggtgtctgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttacgaactt 43172534  T
Q  202 gcgaaacttgatattttggatggtttt 228  Q
    | |||||||| | ||||||||||||||    
T  43172535 gtgaaacttgcttttttggatggtttt 43172561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23017267 - 23017491
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||  |||||||||||||| |||| ||             
T  23017267 tttttctttcttctctgagttctcaaaccatgaacatgggaccacataccagttagggttgcgattctgacggtggaaattcagattttga--------- 23017357  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
     |||     || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  23017358 -tgc-----cgattagggttgcggtggtggtgtttgttgaccttttgaaaaaattaactagtttattttttagatagttttattaacaactttagaaact 23017451  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | ||||||||||||||||| ||| ||||    
T  23017452 tgtgaaacttgcttttttggatggttttatgaatgactta 23017491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 21486419 - 21486644
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  ||| ||||||||||||| | || ||||||||| ||||||||||| |||||| ||| |||||||||| |||||||| ||         
T  21486419 tttttctttcttctctaagtcctcaaaccatgaacagggaagcacatactagttagggttgtgattccgacgatggaaattcagatttcgacgcc----- 21486513  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagttta-ttttttagatagttttatcaacaactttggaaac 199  Q
              ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| | |||    
T  21486514 ----------ggttaggattgcagtggtggtgtttgttgaccttttgaaaaaattaactagtttatttttttagatagttttattaacaactttaggaac 21486603  T
Q  200 ttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||| |||||||| | |||||||| |||||||| ||| ||||    
T  21486604 ttgtgaaacttgcttttttggatagttttatgaatgactta 21486644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 42610883 - 42611013
Alignment:
Q  104 cgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
    ||||| || ||||| || |||||||||||||||||||||||||||| |||||||||||| || ||||||||| ||||||| ||||||||| | ||||||     
T  42610883 cgacgccgattaggattacggtggtggtgtttgttgaccttttgaaaaaattaactagtctagtttttagatggttttattaacaactttaggaacttgt 42610982  T
Q  204 gaaacttgatattttggatggttttatggat 234  Q
    |||||||| | ||||||||||||||||||||    
T  42610983 gaaacttgcttttttggatggttttatggat 42611013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5771946 - 5771755
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||| || |||||||||||  ||||| | | ||||||||||||||||||||| ||||||| || | ||||||||  | | | || || ||||    
T  5771946 tttttctttcttatctgagttctcaaaagatgaacatgagagcacataccagttagggttacgattccgacaggggaaattctgactgcaacaccggtga 5771847  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaacttt 193  Q
    | | ||||  |||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||    
T  5771846 tcgtgacgctggttagagttgcgatggtggtgtttgatgaccttttgaagaaattaac-agtttatttttttgatagttttattaaaaacttt 5771755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 31445773 - 31445852
Alignment:
Q  161 gtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||||||||||||||| ||||||||| | |||||| ||||||||   ||||||||||||||||||||||||||    
T  31445773 gtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcatttttggatggttttatggatggctta 31445852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 6268851 - 6268941
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttt 227  Q
    |||| |||||||| |||||||||||||| ||| ||  |||| ||||| ||||||||| |||||||| |||||||| | ||||| |||||||    
T  6268851 ttgaacttttgaaaaaattaactagtttgtttcttgaataggtttattaacaactttagaaacttgtgaaacttgtttttttgaatggttt 6268941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 1254215 - 1254154
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaa 198  Q
    |||| |||||||||||| |||||| |||||||||| ||||| ||||| ||||||||| ||||    
T  1254215 ttgaacttttgaagaaactaactaatttattttttggataggtttattaacaactttagaaa 1254154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 14741826 - 14741899
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaactt 210  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||   ||| ||| |||||||| |||||||    
T  14741826 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 14741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 4639600 - 4639554
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  4639600 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 4639554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 42043744 - 42043817
Alignment:
Q  168 ttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggcttaga 242  Q
    |||| ||||||||||| ||||||| | ||||| || ||| |||| | |||||||||||||||||||||| |||||    
T  42043744 ttttggatagttttattaacaactctagaaacatgtgaa-cttgcttttttggatggttttatggatggtttaga 42043817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 33497040 - 33496988
Alignment:
Q  174 atagttttatcaacaactttggaaacttgcgaaacttgatattttggatggtt 226  Q
    |||||||||| ||||||||| | |||||| ||||||||  |||||||||||||    
T  33497040 atagttttattaacaactttaggaacttgtgaaacttgccattttggatggtt 33496988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 4962534 - 4962303
Alignment:
Q  9 tcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacg 108  Q
    ||||||| |||||||||||||||||| | ||||||||||| ||||||||| ||||||||  ||||||||||||||| |||||||  |  |||||||||||    
T  4962534 tcttctctgagttctcaaaccatgaacaggggagcacatatcagttagggctgcgattcagacggtggaaattcatgtttcgacatcgatgattgcgacg 4962435  T
Q  109 tcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaac 208  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||| |||||    
T  4962434 ttggttagggttgcggtggtggtgtttgttaaccttttgaagaaattaactagtttattttttagatagttttattgacaactttaggaacttgtgaaac 4962335  T
Q  209 ttgatattttggatggttttatggatggctta 240  Q
    ||| | ||||||||||||||||||| ||||||    
T  4962334 ttgcttttttggatggttttatggaaggctta 4962303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43173171 - 43173410
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| |||||||  |||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||| | |||| |||||||||||| |  ||||    
T  43173171 tttttctttcttctctaagttttcaaaccatgaataggggagcacataccagttagagttgcgattccgacgatagaaactcatatttcgacgctggtga 43173270  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||    
T  43173271 ttgcgatgccggttagggttgcggcggcggtgtttgttgaccttttgaagaaattaactaatttattttttagatagttttattaacaactttaggaact 43173370  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
     | |||||||| | ||||||||||||||||||||| ||||    
T  43173371 ggtgaaacttgcttttttggatggttttatggatgactta 43173410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 49458639 - 49458873
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| || |||| |||||||||||||||||| | || ||||||||||||||||||||||     | ||||||||||||||||| |||||  | ||||    
T  49458639 tttttctttcctctctgagttctcaaaccatgaaaatggaagcacataccagttagggttgc-----cgacggtggaaattcatatatcgacgtcggtga 49458733  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    ||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||    
T  49458734 ttgcgtcgccggttagggttgtggtggtagtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaact 49458833  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||||| ||||||||||||||||||||| ||||    
T  49458834 tgtgaaacttgattttttggatggttttatggatgactta 49458873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33693534 - 33693773
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| || ||||||||||||||| | || ||||||||||||||| |||||  ||| | |||| | ||||||| ||||| |  || ||||    
T  33693534 tttttctttcttctctgaattctcaaaccatgaacagggaagcacataccagttatggttgtaatttcgacggggaaaattcagatttcaatgcctgtga 33693633  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||| ||  || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||    
T  33693634 ttgcgacgccgactacggttgcagtggtggtgtttgttgaccttttgaagaaattaagtagtttattttttagatagttttattaacaactttaggaact 33693733  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | ||||||||||||||||||||||||||    
T  33693734 tgtgaaacttgcttttttggatggttttatggatggctta 33693773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 7437310 - 7437142
Alignment:
Q  71 cggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttt 170  Q
    ||||||||||||| ||||||||  | ||||||||||||  |||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||    
T  7437310 cggtggaaattcagatttcgacgtcagtgattgcgacgctggttagagttgcggtggtggtgtttgtttactttttgaagtaattaactagtttattttt 7437211  T
Q  171 tagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||||| ||||||||| | ||||||  ||||||| | ||||||||||||||||||||||||||    
T  7437210 tagatagttttattaacaactttaggaacttgttaaacttg-ttttttggatggttttatggatggctta 7437142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 21386281 - 21386081
Alignment:
Q  40 gagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttg 139  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||  ||| ||||  | ||| |   || || |||||||||||||||||||||||||| ||    
T  21386281 gagcacataccagttagggttacgattccgacgggggaaattccgattgcgacgtcggtgttaaggatgttggttagggttgcggtggtggtgtttgatg 21386182  T
Q  140 accttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctt 239  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||   |||||| |||||||| | ||| ||||||||||||||||| |||    
T  21386181 accttttgaagaaattaactagtttattttttggacagttttattaacaactttacgaacttgtgaaacttgctttttcggatggttttatggatgactt 21386082  T
Q  240 a 240  Q
    |    
T  21386081 a 21386081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16155417 - 16155529
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| ||||||||||||||| || | ||||||||||||||||||||||||| ||||| || ||||||||| | |||||||| || ||||    
T  16155417 tttttctttcttctctgagttctcaaaccatcaacaggggagcacataccagttagggttgcaattccgacagtggaaatttagatttcgacaccggtga 16155516  T
Q  101 ttgcgacgtcggt 113  Q
    || ||||| ||||    
T  16155517 ttacgacgccggt 16155529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 30238264 - 30238175
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttt 227  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||||| || ||||||||   |||||||||||||    
T  30238264 ttgaacttttgaa-aaattaactagtttattttttggataggtttattaacaacttttgaaacctgtgaaacttgtatttttggatggttt 30238175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7667177 - 7667236
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggtt 60  Q
    ||||||| |||||||  ||||||||||||||||| | | |||||||||||||||||||||    
T  7667177 tttttctttcttctcttagttctcaaaccatgaacaggagagcacataccagttagggtt 7667236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 9031746 - 9031707
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagata 176  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  9031746 ttgaacttttgaagaaattaactagtttattttttggata 9031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 53836333 - 53836379
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  53836333 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 53836379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 34218700 - 34218890
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| || ||||    
T  34218700 tttttctctcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaattccgacggtggaaattcagatttcgacgccggtga 34218799  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactt 192  Q
    ||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  34218800 ttgtgacgtcagttagggttgcggtggtggtgtttgttgatc-tttgaagaaattaactaatttattttctagatagttttatcaacaactt 34218890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 51 - 240
Target Start/End: Complemental strand, 29716683 - 29716494
Alignment:
Q  51 agttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaag 150  Q
    |||||||||||||||| | ||||||||||||||  ||||||| ||  ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29716683 agttagggttgcgatttcgacggtggaaattcagttttcgacaccgatgattacgacgtcggttagggttacggtggtggtgcttgttgaccttttgaag 29716584  T
Q  151 aaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||||||||||||||||||||||||| || |||||| | |||||| | |||||| | ||||| |||||||| |||||| ||||    
T  29716583 aaattaactagtttattttttagatagttttattaaaaactttaggaacttgtgtaacttgcttttttgaatggttttgtggatgactta 29716494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 36196075 - 36196018
Alignment:
Q  136 gttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaacttt 193  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  36196075 gttgaacttttgaagaaattaactagtttattttttggatagttttattaacaacttt 36196018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 15286190 - 15286126
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaactt 201  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||    
T  15286190 ttgaacttttgaagaaattaacttgtttattttttggatagttttattaacaactttagaaactt 15286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 31913805 - 31913883
Alignment:
Q  150 gaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttg-atattttggatggttt 227  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||  ||||||| ||||||||  | |||||||||||||    
T  31913805 gaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaacttgtgttttttggatggttt 31913883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 5650499 - 5650412
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatgg 224  Q
    |||||||||||||||||||| ||| ||| |||||| |||||||||||   ||| ||| |||||||| |||||||| | ||| ||||||    
T  5650499 ttgaccttttgaagaaattacctaatttgtttttttgatagttttattctcaagtttagaaacttgtgaaacttgctttttgggatgg 5650412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29758973 - 29759036
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaata----agggagcacataccagttagggtt 60  Q
    ||||||| ||||||||||||| |||||||||||| |    ||||||||||||||||||||||||    
T  29758973 tttttctttcttctccgagttttcaaaccatgaacaagctagggagcacataccagttagggtt 29759036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 28622894 - 28622848
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  28622894 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 28622848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 29759077 - 29759113
Alignment:
Q  99 gattgcgacgtcggttagggttgcggtggtggtgttt 135  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  29759077 gattgcaacgccggttagggttgcggtggtggtgttt 29759113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42423474 - 42423682
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||| | ||||| |||||||||||| | | |||||||||||||||| |||||| |||||||||||||||||||| |||||||| || ||||    
T  42423474 tttttctttcttccctgagttttcaaaccatgaacatgagagcacataccagttatggttgc-attccaacggtggaaattcagatttcgacgccggtga 42423572  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |    
T  42423573 ttgcgacgccagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaat 42423672  T
Q  201 tgcgaaactt 210  Q
    || |||||||    
T  42423673 tgtgaaactt 42423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27878443 - 27878204
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| ||||||| |||||||||| | |||||||||||||| | |||||||  ||||| |  ||||||||| | |||||||| || ||||    
T  27878443 tttttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtga 27878344  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||    
T  27878343 ttgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattatcaactttaggaact 27878244  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | |||||||||||||||| |||| ||||    
T  27878243 tgtgaaacttgcttttttggatggttttatagatgactta 27878204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28018624 - 28018385
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| ||||||| |||||||||| | |||||||||||||| | |||||||  ||||| |  ||||||||| | |||||||| || ||||    
T  28018624 tttttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtga 28018525  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
    |||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||    
T  28018524 ttgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattatcaactttaggaact 28018425  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | |||||||||||||||| |||| ||||    
T  28018424 tgtgaaacttgcttttttggatggttttatagatgactta 28018385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 12737875 - 12737683
Alignment:
Q  41 agcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttga 140  Q
    ||||| ||| |||||||||||||||||| |||||| ||||||| |||||||  ||  |||||||||||| |||||||||||| |||||||||||||||||    
T  12737875 agcacgtactagttagggttgcgattccgacggtgaaaattcagatttcgatgccgatgattgcgacgttggttagggttgcagtggtggtgtttgttga 12737776  T
Q  141 ccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatgga 233  Q
    |||||||||||||||||||||||||||||| ||||||| |||| ||||||||| | |||||| |||||||| | |||||||||||||||||||    
T  12737775 ccttttgaagaaattaactagtttatttttaagatagtattattaacaactttaggaacttgtgaaacttgcttttttggatggttttatgga 12737683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 27915384 - 27915148
Alignment:
Q  4 ttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattg 103  Q
    |||| ||||||| ||||||| |||||||||| | |||||||||||||| | ||||||| |||||| |  | | ||||| | |||||||| || |||||||    
T  27915384 ttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattg 27915285  T
Q  104 cgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
      | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||     
T  27915284 ttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaattttaggaacttgt 27915185  T
Q  204 gaaacttgatattttggatggttttatggatggctta 240  Q
    |||||||| | |||||||||||||||| |||| ||||    
T  27915184 gaaacttgcttttttggatggttttatagatgactta 27915148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 27961803 - 27961567
Alignment:
Q  4 ttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattg 103  Q
    |||| ||||||| ||||||| |||||||||| | |||||||||||||| | ||||||| |||||| |  | | ||||| | |||||||| || |||||||    
T  27961803 ttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattg 27961704  T
Q  104 cgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgc 203  Q
      | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||     
T  27961703 ttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttattaacaattttaggaacttgt 27961604  T
Q  204 gaaacttgatattttggatggttttatggatggctta 240  Q
    |||||||| | |||||||||||||||| |||| ||||    
T  27961603 gaaacttgcttttttggatggttttatagatgactta 27961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 12522236 - 12521998
Alignment:
Q  2 ttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgat 101  Q
    |||||| |||||||  ||||||||||| ||||| | |||||||||||||||||||||||||||||||  ||||||||||||| ||| |||| ||  ||||    
T  12522236 ttttctttcttctctaagttctcaaacgatgaacaggggagcacataccagttagggttgcgattccggcggtggaaattcagattgcgacgccgatgat 12522137  T
Q  102 tgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaactt 201  Q
    ||||  |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||||    
T  12522136 tgcgttgtcgatttgggttgcggcggtggtgtttgttgaccttttgaagaaattaactagtttatttttttgatagttttaataacaactttaggaactt 12522037  T
Q  202 gcgaaacttgatattttggatggttttatggatggctta 240  Q
    | ||||| || | |||||| | | |||||||||| ||||    
T  12522036 gtgaaacatgcttttttgggttgatttatggatgactta 12521998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 27974737 - 27974560
Alignment:
Q  63 gattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagt 162  Q
    |||||| |||||||||||| | ||| |||| || |||||||||| | |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  27974737 gattccgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagt 27974638  T
Q  163 ttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||| ||||||| ||||||||||| | |||||| |||||||| | ||||||||||||||||||||| ||||    
T  27974637 ttattttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgactta 27974560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 28032006 - 28031829
Alignment:
Q  63 gattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagt 162  Q
    |||||| |||||||||||| | ||| |||| || |||||||||| | |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  28032006 gattccgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagt 28031907  T
Q  163 ttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||||| ||||||| ||||||||||| | |||||| |||||||| | ||||||||||||||||||||| ||||    
T  28031906 ttattttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggttttatggatgactta 28031829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 44977016 - 44977233
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    |||||||||||||||||| | ||||||||||||| ||||| ||| ||||||  |||||| ||||||| |||||||| |   |||  |||||  | |||||    
T  44977016 gagttctcaaaccatgaacaggggagcacatacctgttagagttacgattctgacggtgaaaattcagatttcgacacggatgagagcgacaccagttag 44977115  T
Q  117 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatatt 216  Q
    ||||| ||| ||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| | ||    
T  44977116 ggttgtggtagtgctgtttgta-accttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgctttt 44977214  T
Q  217 ttggatggttttatggatg 235  Q
    ||| |||||||||||||||    
T  44977215 ttgaatggttttatggatg 44977233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8029668 - 8029446
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| || ||||||||| ||||| | ||||||||||||||||||  ||||||||||| ||||| |||||||||||||| || ||         
T  8029668 tttttctttcttctctgaattctcaaactatgaacaggggagcacataccagttaatgttgcgattccgacggtagaaattcatatttccacgcc----- 8029574  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaact 200  Q
              ||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||||    
T  8029573 ----------ggttagggttgtggtggtagtgtttgttgacttttt-aagaaattaactagtttattttttagatagttttattaacaattttaggaact 8029485  T
Q  201 tgcgaaacttgatattttggatggttttatggatggctta 240  Q
    || |||||||| | ||||||||||||||||||||| ||||    
T  8029484 tgtgaaacttgct-ttttggatggttttatggatgactta 8029446  T

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Target: chr8; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 27869662 - 27869530
Alignment:
Q  110 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||| ||||||    
T  27869662 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttat-ttttagatagttttattaacaactttaggaacttgtgaaact 27869564  T
Q  210 tg---atattttggatggttttatggatggctta 240  Q
    ||    | |||||||||||||||| |||| ||||    
T  27869563 tgttttttttttggatggttttatagatgactta 27869530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 6387914 - 6387748
Alignment:
Q  17 gagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgcgacgtcggttag 116  Q
    |||||||||||||||||| | | |||||||||  |||||||||||||||| | | || ||||||||  ||| | || || |||||||||| || ||||||    
T  6387914 gagttctcaaaccatgaacatgagagcacatattagttagggttgcgatttcgatgggggaaattccgattgcaacgccggtgattgcgatgttggttag 6387815  T
Q  117 ggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    |||||||||||||||||||| |||| |||||||||||||| | |||||||||||| |||||||||||    
T  6387814 ggttgcggtggtggtgtttgatgactttttgaagaaattagccagtttattttttggatagttttat 6387748  T

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Target: chr8; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 3007532 - 3007407
Alignment:
Q  110 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaact 209  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||  |||||    
T  3007532 cggttagagttgcggtggtgttgtttgttgaccatttgaagaaattaactagtttattttttatatagttttattaacaactttatgaacttgtaaaact 3007433  T
Q  210 tgatattttggatggttttatggatgg 236  Q
    |  | |||||||||||| |||||||||    
T  3007432 t-tttttttggatggttctatggatgg 3007407  T

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Target: chr8; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 24082593 - 24082706
Alignment:
Q  127 gtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaacttgatattttggatggtt 226  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||| || |||||||||   |||||| |||||||| | ||||||||  ||    
T  24082593 gtggtgtttgatgaccttctgaagaaattaagtagtttattttttagatagtttaattaacaactttacgaacttgtgaaacttgcttttttggattatt 24082692  T
Q  227 ttatggatggctta 240  Q
    ||||||||||||||    
T  24082693 ttatggatggctta 24082706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41394209 - 41394276
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattcc 68  Q
    ||||||| |||||||  |||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  41394209 tttttctttcttctctaagttctcaaatcatgaacaggggagcacataccagttagggttgcgattcc 41394276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 33177565 - 33177492
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcgaaactt 210  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||| |||||||||  ||||||| |||||||    
T  33177565 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaactt 33177492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 6387559 - 6387494
Alignment:
Q  175 tagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||| |||||||||  ||||||| |||||||| | ||||||||||||||||||||| ||||    
T  6387559 tagttttattaacaactttataaacttgtgaaacttgcttttttggatggttttatggatgactta 6387494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 27974819 - 27974740
Alignment:
Q  2 ttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaatt 81  Q
    |||||| |||||||  |||||| |||| ||||| | |||||||||||||| ||||||||| |||||  ||||||||||||    
T  27974819 ttttctttcttctctaagttctgaaactatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatt 27974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 28032088 - 28032009
Alignment:
Q  2 ttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaatt 81  Q
    |||||| |||||||  |||||| |||| ||||| | |||||||||||||| ||||||||| |||||  ||||||||||||    
T  28032088 ttttctttcttctctaagttctgaaactatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatt 28032009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 4870842 - 4870785
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttatt-ttttagatagttttatcaacaacttt 193  Q
    |||| ||||||||| |||||||||||||||| |||| ||||||||||| |||||||||    
T  4870842 ttgaacttttgaagtaattaactagtttatttttttggatagttttattaacaacttt 4870785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 41394306 - 41394371
Alignment:
Q  175 tagttttatcaacaactttggaaacttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||||||||| ||||||||| | |||||| |||||||| | |||| |||||||||||||||| ||||    
T  41394306 tagttttattaacaactttaggaacttgtgaaacttgcttttttagatggttttatggatgactta 41394371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19484588 - 19484634
Alignment:
Q  137 ttgaccttttgaagaaattaactagtttattttttagatagttttat 183  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  19484588 ttgacctttcgaagaaattacctagtttgttttttggatagttttat 19484634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3007609 - 3007536
Alignment:
Q  18 agttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcga 91  Q
    ||||||||||| ||||| ||| ||| ||||| |||||||||||| |||||||| | || ||||| | |||||||    
T  3007609 agttctcaaactatgaacaagagagtacatatcagttagggttgggattccaaagatgaaaatttagatttcga 3007536  T

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Target: scaffold0013 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 89552 - 89792
Alignment:
Q  1 tttttctctcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtga 100  Q
    ||||||| ||||||| |||||||||||||||||| | || |||| ||| ||||||||||||||||||| ||||||||||||||||||||| |    | ||    
T  89552 tttttctttcttctctgagttctcaaaccatgaacatggaagcatataacagttagggttgcgattccgacggtggaaattcatatttcgccgtaggcga 89651  T
Q  101 ttgcgacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatag-ttttatcaacaactttggaaac 199  Q
    || ||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | |||    
T  89652 ttacgacgccggttagggttgcagtgatggtctttgttgaccttttgaagaaattaaatagtttattttttagatagtttttattaacaactttaggaac 89751  T
Q  200 ttgcgaaacttgatattttggatggttttatggatggctta 240  Q
    ||| |||||||  | ||||||||||||||||||||||||||    
T  89752 ttgtgaaactttcttttttggatggttttatggatggctta 89792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 9135 - 9370
Alignment:
Q  9 tcttctccgagttctcaaaccatgaataagggagcacata----ccagttagggttgcgattccaacggtggaaattcatatttcgactcccgtgattgc 104  Q
    ||||||| |||||||||||||||||| | |||||||||||    ||||||||||||| |||| | |||||||||||||||||||| || ||  | |||||    
T  9135 tcttctctgagttctcaaaccatgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgc 9234  T
Q  105 gacgtcggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatcaacaactttggaaacttgcg 204  Q
    |||  ||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |    
T  9235 gacaccggttagggttgttgtggtagtgtttgttgtccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtg 9334  T
Q  205 aaacttgatattttggatggttttatggatggctta 240  Q
    ||||||| | ||||||||||||||||| ||| ||||    
T  9335 aaacttgcttttttggatggttttatgaatgactta 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 38242 - 38289
Alignment:
Q  142 cttttgaagaaattaactagtttattttttagatagttttatcaacaa 189  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  38242 cttttgaagaaattaactagtttattttttgaatagttttattaacaa 38289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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