View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_3 (Length: 498)
Name: NF15773_low_3
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 42966094 - 42966436
Alignment:
| Q |
1 |
cttgtaagcatgttaatacttaaaattcgacttgaaatccaagagctattggatgagaagataaatgatctcttcttgtttaatcagagattttgagttt |
100 |
Q |
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| T |
42966094 |
cttgtaagcatgttaatacttaaaattcgacttgaaatccaagagctattggatgagaagataaatgatctcttcttgtttaatcagatattttgagttt |
42966193 |
T |
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| Q |
101 |
gaattcaactttaaaaatgcattcgtgttaaaaaatttgaaggagagttttgtcacctattacgaccatgctcggttcaaaggattagtctttaacttta |
200 |
Q |
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| T |
42966194 |
gaattcaaccttaaaaatgcattcgtgttaaaaaatttgaaggagagttttatcatctattacgaccatgctcggttcaagggattagtctttaacttta |
42966293 |
T |
|
| Q |
201 |
tagttgtaatcagagaatactcaatttacat-nnnnnnnntcaacttaaaagtgaatatttttatgtgggagagtaag-nnnnnnnnnaaggaagttcca |
298 |
Q |
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| T |
42966294 |
tagttgtaatcagagaatactcaatttacataaaaaaaaatcaacttaaaagtgaatatttttatgtgggagagtaagttttttttttaaggaagttcc- |
42966392 |
T |
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| Q |
299 |
tatatatctatgtgtgtatacacacacatttatacaaacttacac |
343 |
Q |
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| T |
42966393 |
-atatatctatgtgtgcacacacacacatttatacaaacttacac |
42966436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 407 - 486
Target Start/End: Original strand, 42966500 - 42966579
Alignment:
| Q |
407 |
agattgttcatccctttgaacaatggttggatacaaggaaaacaattaaggttcatgggtgggtttgaatagttcatctc |
486 |
Q |
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| T |
42966500 |
agattgttcatccctttgaacaatggttggataaaaggaaaacaattaaggttcatgggtgggtttgaatagttcatctc |
42966579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 2023839 - 2023803
Alignment:
| Q |
78 |
gtttaatcagagattttgagtttgaattcaactttaa |
114 |
Q |
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| T |
2023839 |
gtttaataagagattttgagtttgaattcaacattaa |
2023803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 30818549 - 30818485
Alignment:
| Q |
91 |
ttttgagtttgaattcaactttaaaaatgcattcgtgttaaaaaatttgaaggagagttttgtca |
155 |
Q |
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| T |
30818549 |
ttttgggtttgaattcaactttaagaatgcatgaatgttaaattttttgaaggagaattttgtca |
30818485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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