View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_33 (Length: 285)
Name: NF15773_low_33
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 8412200 - 8412414
Alignment:
| Q |
54 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8412200 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8412299 |
T |
|
| Q |
154 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8412300 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8412399 |
T |
|
| Q |
254 |
cctctgtgagttgag |
268 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8412400 |
cctctgtgagttgag |
8412414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 8434298 - 8434512
Alignment:
| Q |
54 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8434298 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8434397 |
T |
|
| Q |
154 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8434398 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8434497 |
T |
|
| Q |
254 |
cctctgtgagttgag |
268 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8434498 |
cctctgtgagttgag |
8434512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 8375806 - 8375603
Alignment:
| Q |
54 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8375806 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8375707 |
T |
|
| Q |
154 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8375706 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8375607 |
T |
|
| Q |
254 |
cctc |
257 |
Q |
| |
|
|||| |
|
|
| T |
8375606 |
cctc |
8375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 52 - 268
Target Start/End: Complemental strand, 8395494 - 8395278
Alignment:
| Q |
52 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
151 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8395494 |
gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt |
8395395 |
T |
|
| Q |
152 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg |
251 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
8395394 |
ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg |
8395295 |
T |
|
| Q |
252 |
ttcctctgtgagttgag |
268 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8395294 |
ttcctctgtgagttgag |
8395278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 52 - 268
Target Start/End: Original strand, 8406078 - 8406294
Alignment:
| Q |
52 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
151 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8406078 |
gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt |
8406177 |
T |
|
| Q |
152 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg |
251 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
8406178 |
ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg |
8406277 |
T |
|
| Q |
252 |
ttcctctgtgagttgag |
268 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8406278 |
ttcctctgtgagttgag |
8406294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 8439297 - 8439500
Alignment:
| Q |
54 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||| |
|
|
| T |
8439297 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc |
8439396 |
T |
|
| Q |
154 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8439397 |
attgcatctttgacatcttcctcggtaggatttcctatagcaattttagtttggatttgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8439496 |
T |
|
| Q |
254 |
cctc |
257 |
Q |
| |
|
|||| |
|
|
| T |
8439497 |
cctc |
8439500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 8417413 - 8417600
Alignment:
| Q |
52 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||||||| | |||||| ||| | |||||||| |||| |
|
|
| T |
8417413 |
gaaggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatcatgtgccaaaacttttt |
8417512 |
T |
|
| Q |
152 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgt |
239 |
Q |
| |
|
| || || |||||||||||||| | |||| |||||||| ||||||| | |||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
8417513 |
caatagcttctttgacatcttctttagtagaatttccaagagcaatttttgtttggatttgactttgaagttgcttgaacaatcttgt |
8417600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 8431353 - 8431442
Alignment:
| Q |
179 |
taggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgag |
268 |
Q |
| |
|
|||||||||||| |||||||||||||| || || |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8431353 |
taggatttccaagagcaattgtagtttgaatttgcctttgaagttacttgaacaatcttgtggcattcctttgttcttctgtgagttgag |
8431442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 8404183 - 8404240
Alignment:
| Q |
104 |
ctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttccattgcatc |
161 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
8404183 |
ctcctaataaaggaagtggataggctttatcaagagccaaaaccttctcaattgcatc |
8404240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 41119234 - 41119276
Alignment:
| Q |
226 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgag |
268 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
41119234 |
ttgaacattcttgtagcattcctttgttcctctgtgagttgag |
41119276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 55331017 - 55331117
Alignment:
| Q |
55 |
ggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcca |
154 |
Q |
| |
|
||||||||| |||||| | | |||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||||||| |||||||| || |||| |
|
|
| T |
55331017 |
ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca |
55331116 |
T |
|
| Q |
155 |
t |
155 |
Q |
| |
|
| |
|
|
| T |
55331117 |
t |
55331117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 55336451 - 55336540
Alignment:
| Q |
54 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaa |
143 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
55336451 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaa |
55336540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University