View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_37 (Length: 272)
Name: NF15773_low_37
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_37 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 24729998 - 24729750
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtg |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24729998 |
gaaagagagtttagacccaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgacacaattccatttaattccatttgttgatgaagtg |
24729899 |
T |
|
| Q |
107 |
aaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
24729898 |
aaagagcagtggagtgatgcttagcttttacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatggagtaagctgtt |
24729799 |
T |
|
| Q |
207 |
gaatgatgaaatgagattgttttcttcatcttggtggtgatgtagttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24729798 |
gaatgatgaaatgagattgttttcttcatcttggtggtgatgtaattgt |
24729750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 24891102 - 24891350
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24891102 |
gaaagagagtttagacccaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactcaattccatttaattccatttgttgatgaagtg |
24891201 |
T |
|
| Q |
107 |
aaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||| | |
|
|
| T |
24891202 |
aaagagcagtggagtgatgcttagcttttacaagggaagataaaatcttgttaaattgaaaggtgggtggggtaggattcttgtgaagaagcaagtgatt |
24891301 |
T |
|
| Q |
207 |
gaatgatgaaatgagattgttttcttcatcttggtggtgatgtagttgt |
255 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
24891302 |
gaatgaggatatgagattgttttcttcatcttgtttgtgatgtaattgt |
24891350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 24710910 - 24710730
Alignment:
| Q |
75 |
aattccatttaattccatttgttgatgaagtgaaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggt |
174 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24710910 |
aattccatttaattccatttgttaatggagagaagaaacagtggggagatgcttagctttgacaagggaagataaaatcttgttaaattggaagatgggt |
24710811 |
T |
|
| Q |
175 |
ggggtaggattcttgtgatgaagcaagctgctgaatgatgaaatgagattgttttcttcatcttggtggtgatgtagttgt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24710810 |
ggggtaggattcttgtgatgaagcaagctgctgaatgatgaaatgagattgttttcttcatcttggtggtgatgtagttgt |
24710730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 31000541 - 31000640
Alignment:
| Q |
139 |
agggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgctgaatgatgaaatgagattgttttcttcatctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||| || |||||||||| ||||||||||| |
|
|
| T |
31000541 |
agggaagataaaatcttgttaaattggatgatgggtggagtaggattcttgtgatggagcaaggtgttgaatgaggatatgagattgtgttcttcatctt |
31000640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 29928385 - 29928197
Alignment:
| Q |
38 |
aattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtgaaagagcagtggagtgatgctt-agctttga |
136 |
Q |
| |
|
|||||||||||||| || |||||| || ||||| |||||| ||||||||||||||| |||||||||||| | |||| | || || || ||||| || |
|
|
| T |
29928385 |
aattgatgaggatgctgcaagtgaccaagtctgaagcaattccgtttaattccatttgtggatgaagtgaaacaacagtagggtattgattgagctt-ga |
29928287 |
T |
|
| Q |
137 |
caagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgctgaatgatgaaatgagattgt |
226 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
29928286 |
caagggaagataaaattttgttgaattggatgatgtgtggtgtaggattcttgtgatgaagcagtcgattgaatgatgaaatgagattgt |
29928197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 24711281 - 24711207
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattcca |
81 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
24711281 |
gaaagagagttttgtcccaattgagaaaagcaattgatgaggatattgaaagtgaataaatctgattcaattcca |
24711207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 29349467 - 29349563
Alignment:
| Q |
20 |
gaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtgaaagagcagt |
116 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| || ||||| |||||| || |||||||||| | |||||||||||| |||||| |
|
|
| T |
29349467 |
gacccaattgagaaaaacaattgatgaggatgttgaaagtgaccaagtctgaagcaattccgttgaattccatttctcgatgaagtgaaatagcagt |
29349563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 29893684 - 29893548
Alignment:
| Q |
19 |
agaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtgaaagagcagtgg |
118 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| || || | | |||||| | ||||||||||||||| ||| |||||| ||||| |
|
|
| T |
29893684 |
agacccaattgacaaaagcaattgatgaggatgttgaaagtgaaaaagtcaggattaattccctcaaattccatttgttgagaaagagaaagaacagtgt |
29893585 |
T |
|
| Q |
119 |
agtgatgcttagctttgacaagggaagataaaatctt |
155 |
Q |
| |
|
|| ||| || | ||||||||||||| ||||||||| |
|
|
| T |
29893584 |
ggtaatgtttggatttgacaagggaacctaaaatctt |
29893548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 29367277 - 29367470
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtg |
106 |
Q |
| |
|
||||||| |||| |||| ||||||||||| ||||| || | |||| | ||| ||| || ||||| |||||| || |||||||||||| ||||||||| |
|
|
| T |
29367277 |
gaaagagggttttgacccaattgagaaaaacaattaatcaagatgctcaaaatgaccaagtctgaagtaattccgttgaattccatttgtcgatgaagtg |
29367376 |
T |
|
| Q |
107 |
aaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaa |
200 |
Q |
| |
|
||| | | ||||||| ||| || | |||||||||||| ||||||||| |||||| | ||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
29367377 |
aaacaacggtggagtaatgattggacttgacaagggaacctaaaatcttaccaaattgaaagatggatggtttaggattcttttgatggagcaa |
29367470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 29072906 - 29072678
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtg |
106 |
Q |
| |
|
||||||| |||| |||| ||||||||||| ||||| || | |||||| ||||||| || | ||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
29072906 |
gaaagagggttttgacccaattgagaaaaacaattaatcaagatgttcaaagtgactaagtttgaagcaattccttttaattccatctgtctatgaagtg |
29072807 |
T |
|
| Q |
107 |
aaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgct |
206 |
Q |
| |
|
||| ||||||| || | || ||| ||||| ||| ||||||||| ||||| | ||||||||| ||||||||||| ||||| ||||| | | |
|
|
| T |
29072806 |
aaatagcagtgtggtaacaattgattttaacaagagaacctaaaatcttaccaaattcaaagatgggtggtgtaggattcttctgatggagcaatcgatt |
29072707 |
T |
|
| Q |
207 |
gaatgatgaaatgagattgttttcttcat |
235 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |
|
|
| T |
29072706 |
gaatgatgaaacgagattgtgttcatcat |
29072678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 29105479 - 29105251
Alignment:
| Q |
7 |
gaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtg |
106 |
Q |
| |
|
||||||| |||| |||| ||||||||||| ||||| || | |||||| ||||||| || | ||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
29105479 |
gaaagagggttttgacccaattgagaaaaacaattaatcaagatgttcaaagtgactaagtttgaagcaattccttttaattccatctgtctatgaagtg |
29105380 |
T |
|
| Q |
107 |
aaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagctgct |
206 |
Q |
| |
|
||| ||||||| || | || ||| ||||| ||| ||||||||| ||||| | ||||||||| ||||||||||| ||||| ||||| | | |
|
|
| T |
29105379 |
aaatagcagtgtggtaacaattgattttaacaagagaacctaaaatcttaccaaattcaaagatgggtggtgtaggattcttctgatggagcaatcgatt |
29105280 |
T |
|
| Q |
207 |
gaatgatgaaatgagattgttttcttcat |
235 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |
|
|
| T |
29105279 |
gaatgatgaaacgagattgtgttcatcat |
29105251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 30040219 - 30040168
Alignment:
| Q |
137 |
caagggaagataaaatcttgttaaattggatgatgggtggggtaggattctt |
188 |
Q |
| |
|
|||| |||||||||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
30040219 |
caagagaagataaaatcttattaaattcaaagatgggtggggtaggattctt |
30040168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 28927913 - 28928031
Alignment:
| Q |
82 |
tttaattccatttgttgatgaagtgaaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtag |
181 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||| ||| || || ||||||||| ||||||||| |||||| | ||||| |||||||| |
|
|
| T |
28927913 |
tttaattccatttgttgatgaagggaaacaacagtggagtaatgattgatcttaacaagggaacctaaaatcttaccaaattgaaagatggatggggtag |
28928012 |
T |
|
| Q |
182 |
gattcttgtgatgaagcaa |
200 |
Q |
| |
|
| |||| ||||| ||||| |
|
|
| T |
28928013 |
ggttctgctgatggagcaa |
28928031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 24220087 - 24220310
Alignment:
| Q |
3 |
aaatgaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatga |
102 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||||| | |||| | ||||||| || | ||| |||||||| |||||||||||| ||||| |
|
|
| T |
24220087 |
aaatgaaagagagttatgacccaattgagaaaaacaattgatcaagatgctcaaagtgaccaagtttgatgcgattccattgaattccatttgtcgatga |
24220186 |
T |
|
| Q |
103 |
agtgaaagagcagtggagtgatgcttagctttgacaagggaagataaaatcttgttaaattggatgatgggtggggtaggattcttgtgatgaagcaagc |
202 |
Q |
| |
|
|| |||| | || |||||| ||| ||||| |||||||| ||| |||||||||| |||||||||||||| ||| ||||| ||||| ||||| |||||| |
|
|
| T |
24220187 |
agggaaacaacaatggagtaatgattagccttgacaagagaacctaaaatcttgccaaattggatgatggatggtgtagggttcttctgatggagcaagt |
24220286 |
T |
|
| Q |
203 |
tgctgaatgatgaaatgagattgt |
226 |
Q |
| |
|
||||||| |||| |||||||| |
|
|
| T |
24220287 |
gattgaatgaggaaacgagattgt |
24220310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 54569 - 54705
Alignment:
| Q |
19 |
agaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaattccatttgttgatgaagtgaaagagcagtgg |
118 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||| || | | | |||||| | ||||||||||||||| ||| |||||| ||||| |
|
|
| T |
54569 |
agacccaattgacaaaagcaattgatgaggatgttgaaagtgacaaagttaggattaattccctcaaattccatttgttgagaaagagaaagaacagtgt |
54668 |
T |
|
| Q |
119 |
agtgatgcttagctttgacaagggaagataaaatctt |
155 |
Q |
| |
|
|| ||| || | ||||||||||||| ||||||||| |
|
|
| T |
54669 |
ggtaatgtttggatttgacaagggaacctaaaatctt |
54705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 51495 - 51545
Alignment:
| Q |
136 |
acaagggaagataaaatcttgttaaattggatgatgggtggggtaggattc |
186 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
51495 |
acaagggaacctaaaatcttgttaaattcgatgatggatggggtaggattc |
51545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 44855 - 44906
Alignment:
| Q |
137 |
caagggaagataaaatcttgttaaattggatgatgggtggggtaggattctt |
188 |
Q |
| |
|
|||| |||||||||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
44855 |
caagagaagataaaatcttattaaattcaaagatgggtggggtaggattctt |
44906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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