View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_4 (Length: 492)

Name: NF15773_low_4
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_4
NF15773_low_4
[»] chr7 (7 HSPs)
chr7 (20-480)||(32713976-32714436)
chr7 (31-366)||(32717176-32717510)
chr7 (196-306)||(32708183-32708293)
chr7 (353-419)||(7612346-7612412)
chr7 (383-417)||(8704503-8704537)
chr7 (383-417)||(9210535-9210569)
chr7 (346-419)||(22759065-22759139)
[»] chr6 (2 HSPs)
chr6 (232-306)||(10381837-10381911)
chr6 (232-306)||(10408327-10408401)
[»] chr3 (8 HSPs)
chr3 (346-419)||(30574029-30574102)
chr3 (361-419)||(2304358-2304416)
chr3 (352-417)||(28795961-28796025)
chr3 (346-408)||(3776756-3776819)
chr3 (380-419)||(20669093-20669132)
chr3 (346-407)||(34118836-34118897)
chr3 (389-417)||(1508710-1508738)
chr3 (373-417)||(46778356-46778400)
[»] chr5 (11 HSPs)
chr5 (351-411)||(5963407-5963467)
chr5 (346-414)||(6593180-6593248)
chr5 (344-412)||(5559608-5559676)
chr5 (346-419)||(30291141-30291214)
chr5 (358-419)||(41819504-41819565)
chr5 (389-419)||(39105387-39105417)
chr5 (389-419)||(42573896-42573926)
chr5 (346-419)||(14675017-14675090)
chr5 (346-419)||(28776856-28776928)
chr5 (369-417)||(1130862-1130910)
chr5 (351-411)||(6944882-6944942)
[»] chr2 (6 HSPs)
chr2 (353-419)||(9833042-9833108)
chr2 (346-419)||(9174695-9174767)
chr2 (346-419)||(15288723-15288796)
chr2 (369-417)||(22971646-22971694)
chr2 (349-417)||(32592461-32592528)
chr2 (389-417)||(42659280-42659308)
[»] chr8 (6 HSPs)
chr8 (351-418)||(41475178-41475244)
chr8 (389-419)||(37444532-37444562)
chr8 (389-419)||(40859835-40859865)
chr8 (353-419)||(43730664-43730730)
chr8 (389-417)||(31916538-31916566)
chr8 (389-417)||(38750271-38750299)
[»] chr4 (8 HSPs)
chr4 (346-419)||(2987069-2987142)
chr4 (346-407)||(19039661-19039722)
chr4 (346-415)||(50298411-50298480)
chr4 (361-415)||(39929882-39929935)
chr4 (354-419)||(42641750-42641815)
chr4 (351-399)||(16494920-16494968)
chr4 (389-417)||(22030117-22030145)
chr4 (355-419)||(51555984-51556047)
[»] chr1 (6 HSPs)
chr1 (346-415)||(1829075-1829143)
chr1 (352-399)||(12480932-12480979)
chr1 (389-419)||(5894280-5894310)
chr1 (389-419)||(38116302-38116332)
chr1 (390-419)||(23544757-23544786)
chr1 (388-417)||(33541837-33541866)
[»] scaffold0590 (1 HSPs)
scaffold0590 (351-419)||(1191-1258)
[»] scaffold0275 (1 HSPs)
scaffold0275 (351-419)||(2717-2784)


Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 32713976 - 32714436
Alignment:
Q  20 gaacatgggtctataaccccttttactcaaggtcttagccttatatatatccaagtctttgccacaaactttccacagcttgaaaacaacataccaaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32713976 gaacatgggtctataaccccttttactcaaggtcttagccttatatatatccaagtctttgccacaaactttccacagcttgaaaacaacataccaaaat 32714075  T
Q  120 gagttcttcattttggactttgtgtttgattttatcatcacttgtctctttttcattatgtgctcctccaaggacaccagtggatgtaccatttggaaga 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32714076 gagttcttcattttggactttgtgtttgattttagcatcacttgtctctttttcattatgtgctcctccaaggacaccagtggatgtaccatttggaaga 32714175  T
Q  220 aactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggttagtgtttaacac 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  32714176 aactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcatcttgataaatacactggttggtgtttaacac 32714275  T
Q  320 acttcatagcttttctatttagctcgtgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32714276 acttcatagcttttctatttagctcgtgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 32714375  T
Q  420 aagaacagatcataaatacttatgctagtacatatgctataatatgtcaatccatgccctt 480  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32714376 aagaacatatcataaatacttatgctagtacatatgctatattatgtcaatccatgccctt 32714436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 32717176 - 32717510
Alignment:
Q  31 tataaccccttttactcaaggtcttagccttatatatatccaagtctttgccacaaactttccacagcttgaaaacaacataccaaaatgagttcttcat 130  Q
    |||||||| |||||| || ||||||||||| ||||||| ||||||||| |||||||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  32717176 tataaccctttttacccatggtcttagcct-atatatacccaagtcttagccacaaacttttcacaacttaaaaacaacacaccaaaatgagttcttcat 32717274  T
Q  131 tttggactttgtgtttgattttatcatcacttgtctctttttcattatgtgctcctccaaggacaccagtggatgtaccatttggaagaaactattatcc 230  Q
    ||||| |||| |||||||| ||| ||||||| || |||| |||| | ||||||||||||||||  ||||| |||||||||||||||||||||||||| ||    
T  32717275 tttggtctttatgtttgatcttagcatcactagtttcttcttcactctgtgctcctccaaggaagccagttgatgtaccatttggaagaaactattaccc 32717374  T
Q  231 aacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggttagtgtttaacacacttcatagct 330  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| ||||||   ||    
T  32717375 cacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcatcttgacaagtacactggttagtgcttaacaaacttcaatact 32717474  T
Q  331 tttctatttagctcgtgttcggataaacaacttaat 366  Q
    || ||||||||  | |||| | ||||| ||||||||    
T  32717475 ttcctatttaggccatgtttgtataaataacttaat 32717510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 32708183 - 32708293
Alignment:
Q  196 ccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgata 295  Q
    ||||| |||||||| |||||  ||||||||   |||||||||||||||||||| ||||||||||| ||||  |||||||||||| | |||| ||||||||    
T  32708183 ccagtagatgtaccttttggtcgaaactatgtaccaacttgggcttttgatcacatcaaatactttaatgaaggttctgagattgaacttcttcttgata 32708282  T
Q  296 aatacactggt 306  Q
    |||||||||||    
T  32708283 aatacactggt 32708293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 7612346 - 7612412
Alignment:
Q  353 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||| || ||||||  |||| || |||||||||||||| | ||||||||||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctat 7612412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 8704503 - 8704537
Alignment:
Q  383 aaacatttatcatgataagcgcttatgtataagct 417  Q
    ||||| |||||||||||||||||||||||||||||    
T  8704503 aaacagttatcatgataagcgcttatgtataagct 8704537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 9210535 - 9210569
Alignment:
Q  383 aaacatttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||| ||||||||||||||||    
T  9210535 aaacatttatcatgataatcgcttatgtataagct 9210569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 22759065 - 22759139
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaaca--tttatcatgataagcgcttatgtataagctat 419  Q
    |||| ||||||||||||||||| |  ||||||| ||||||||  |||||||| ||||||| |||||| ||||||||    
T  22759065 tgtttggataaacaacttaattaagcacttatagtataaacatttttatcat-ataagcgtttatgtttaagctat 22759139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 10381911 - 10381837
Alignment:
Q  232 acttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggt 306  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||||    
T  10381911 acttgggcttatgatcatatcaaatacttaaatggtggttctgagattctgcttaatcttgataaatccactggt 10381837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 10408327 - 10408401
Alignment:
Q  232 acttgggcttttgatcatatcaaatacttcaatggtggttctgagattcagcttcatcttgataaatacactggt 306  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||| |||| |||||||||| | |||||||    
T  10408327 acttgggcttatgatcatatcaaatacttaaatggtggttctgaaattctgcttaatcttgataagtccactggt 10408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 30574102 - 30574029
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| ||||||||| | |||||| || ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  30574102 tgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctat 30574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 2304416 - 2304358
Alignment:
Q  361 cttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||||| | || |||| ||||||||||| | |||||||||||||||    
T  2304416 cttaatttacaacttataacacaagcattcatcatgataagtgattatgtataagctat 2304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 28796025 - 28795961
Alignment:
Q  352 gataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagct 417  Q
    ||||||||||||| |||||| ||||||  | |||||||||||||||||| | ||||||||||||||    
T  28796025 gataaacaactta-tttacagcttatagcacaaacatttatcatgataaacacttatgtataagct 28795961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 3776819 - 3776756
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcat-gataagcgcttat 408  Q
    |||| ||||||||||||||||||||  |||||| |||||||| |||||||  ||||||||||||    
T  3776819 tgtttggataaacaacttaatttactgcttatagtataaacacttatcatctataagcgcttat 3776756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 20669093 - 20669132
Alignment:
Q  380 tataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  20669093 tataagcatttatcatgataagcacttatgtataagctat 20669132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 34118836 - 34118897
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgctta 407  Q
    |||| ||||||||||||||| ||||||||||||  |||| | || |||||||||||| ||||    
T  34118836 tgtttggataaacaacttaaattacaacttatagcataagcgttgatcatgataagctctta 34118897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 1508738 - 1508710
Alignment:
Q  389 ttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||||||||||||||    
T  1508738 ttatcatgataagcgcttatgtataagct 1508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 46778400 - 46778356
Alignment:
Q  373 cttataatataaacatttatcatgataagcgcttatgtataagct 417  Q
    |||||| || ||||| |||||||||||||||||||||||| ||||    
T  46778400 cttatagtacaaacacttatcatgataagcgcttatgtatcagct 46778356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 5963467 - 5963407
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgta 411  Q
    |||||||||||||||||| ||| |||||  |||| ||||||||||||||||||||||||||    
T  5963467 ggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgta 5963407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 6593180 - 6593248
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataa 414  Q
    |||| ||||||||||||||||||||| ||||||  |||| |||||||| ||||| ||||||||||||||    
T  6593180 tgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataa 6593248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 5559608 - 5559676
Alignment:
Q  344 cgtgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtat 412  Q
    |||||| |||||||||||||||||| || ||||||  |||||  ||||||||||||||||||| |||||    
T  5559608 cgtgtttggataaacaacttaatttgcagcttatataataaatgtttatcatgataagcgcttgtgtat 5559676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 30291141 - 30291214
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| |||||| ||||||||||| || ||||||  ||||||| |||||||||||| |||||||| |||| ||||    
T  30291141 tgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatgcataacctat 30291214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 41819504 - 41819565
Alignment:
Q  358 caacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||| ||||||  ||||||| |||||||||| |||| || ||||||||||||    
T  41819504 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagctat 41819565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Original strand, 39105387 - 39105417
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  39105387 ttatcatgataagcgcttatgtataagctat 39105417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 42573926 - 42573896
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  42573926 ttatcatgataagcgcttatgtataagctat 42573896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 14675090 - 14675017
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| ||| |||||||||||||| || |||||   ||||| | ||||||||||||| ||||||||| |||||||    
T  14675090 tgtttggacaaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctat 14675017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 28776856 - 28776928
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| |||||||||||||| ||| || ||||||   ||| || ||||||||||||| |||||||||||||||||    
T  28776856 tgtttggataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctat 28776928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 1130862 - 1130910
Alignment:
Q  369 acaacttataatataaacatttatcatgataagcgcttatgtataagct 417  Q
    ||||||||||  | |||||||||| ||||||||||||| ||||||||||    
T  1130862 acaacttatagcacaaacatttattatgataagcgcttgtgtataagct 1130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 6944942 - 6944882
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgta 411  Q
    |||||||||||||||||| || ||||||| |||| || ||||||| |||||| || |||||    
T  6944942 ggataaacaacttaatttgcatcttataacataatcacttatcattataagcactaatgta 6944882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 9833042 - 9833108
Alignment:
Q  353 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||||| | ||||||||||| ||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctat 9833108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 9174695 - 9174767
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| |||||||||||||| ||| || ||||| | || | ||||||||||||||| | ||||||||||||||||    
T  9174695 tgtttggataaacaactta-tttgcagcttatgagattagcatttatcatgataaacacttatgtataagctat 9174767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 15288796 - 15288723
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| |||| |||| ||||||||| | ||||||  ||||||  | |||| ||||||||||||||||||||||||    
T  15288796 tgtttggattaacagcttaatttatagcttatagcataaactctcatcaagataagcgcttatgtataagctat 15288723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 22971694 - 22971646
Alignment:
Q  369 acaacttataatataaacatttatcatgataagcgcttatgtataagct 417  Q
    ||||||||||  | |||||||||| ||||||||||||| ||||||||||    
T  22971694 acaacttatagcacaaacatttattatgataagcgcttgtgtataagct 22971646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 32592461 - 32592528
Alignment:
Q  349 tcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||| |||  | ||||||  | ||||| ||||||| |||||||||||||||||||||    
T  32592461 tcggataaacaactta-tttgtagcttatagcacaaacacttatcattataagcgcttatgtataagct 32592528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 42659308 - 42659280
Alignment:
Q  389 ttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||||||||||||||    
T  42659308 ttatcatgataagcgcttatgtataagct 42659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 41475244 - 41475178
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagcta 418  Q
    |||||||||||||| ||| |||||||||| | ||||| || ||||||||||| |||||||||||||||    
T  41475244 ggataaacaactta-tttgcaacttataagacaaacacttgtcatgataagcacttatgtataagcta 41475178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 37444562 - 37444532
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  37444562 ttatcatgataagcgcttatgtataagctat 37444532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 40859865 - 40859835
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  40859865 ttatcatgataagcgcttatgtataagctat 40859835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 43730664 - 43730730
Alignment:
Q  353 ataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||| || ||| ||  |||||  ||||||||||||||  ||||||||||||||||    
T  43730664 ataaacaacttaatttgcagcttttagcataaaagtttatcatgataagtacttatgtataagctat 43730730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Original strand, 31916538 - 31916566
Alignment:
Q  389 ttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||||||||||||||    
T  31916538 ttatcatgataagcgcttatgtataagct 31916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Original strand, 38750271 - 38750299
Alignment:
Q  389 ttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||||||||||||||    
T  38750271 ttatcatgataagcgcttatgtataagct 38750299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 2987069 - 2987142
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||| |||||||||| ||||||| || ||||||| ||||   ||||||||||||||| ||||| ||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctat 2987142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 19039661 - 19039722
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgctta 407  Q
    |||| |||||||||||||||||| || |||||||||||  || ||||||||||||| |||||    
T  19039661 tgtttggataaacaacttaatttgcagcttataatataggcaattatcatgataagtgctta 19039722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 50298411 - 50298480
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 415  Q
    |||| ||||||||||||||||||  | ||||||  ||||||| ||||||||||||  |||||||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataag 50298480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 39929935 - 39929882
Alignment:
Q  361 cttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 415  Q
    ||||||| ||||||||||| |||||||||||||||  |||| |||||||||||||    
T  39929935 cttaattaacaacttataacataaacatttatcat-ttaagtgcttatgtataag 39929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 42641815 - 42641750
Alignment:
Q  354 taaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    |||||| |||||||| || ||||| | |||| || ||||||||||||| | |||||||||||||||    
T  42641815 taaacagcttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctat 42641750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 16494968 - 16494920
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgata 399  Q
    ||||||||||||||  || |||||||||  |||||||||||||||||||    
T  16494968 ggataaacaacttagcttccaacttatagcataaacatttatcatgata 16494920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Original strand, 22030117 - 22030145
Alignment:
Q  389 ttatcatgataagcgcttatgtataagct 417  Q
    |||||||||||||||||||||||||||||    
T  22030117 ttatcatgataagcgcttatgtataagct 22030145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 51556047 - 51555984
Alignment:
Q  355 aaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||  |  |||||||| |||| |||||||||| ||||| |||||||||||||||||    
T  51556047 aaacaacttaataaagcacttataacataaccatttatcat-ataagtgcttatgtataagctat 51555984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 1829143 - 1829075
Alignment:
Q  346 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 415  Q
    |||| |||||||||||||| || | ||| ||||  ||||||| |||||||||||||||||||||||||||    
T  1829143 tgtttggataaacaacttatttga-aacctatagcataaacacttatcatgataagcgcttatgtataag 1829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 12480932 - 12480979
Alignment:
Q  352 gataaacaacttaatttacaacttataatataaacatttatcatgata 399  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  12480932 gataaacaacttaatttagaacttatagcataagcatttatcatgata 12480979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 5894310 - 5894280
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  5894310 ttatcatgataagcgcttatgtataagctat 5894280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 38116332 - 38116302
Alignment:
Q  389 ttatcatgataagcgcttatgtataagctat 419  Q
    |||||||||||||||||||||||||||||||    
T  38116332 ttatcatgataagcgcttatgtataagctat 38116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Complemental strand, 23544786 - 23544757
Alignment:
Q  390 tatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||||||||||||||||    
T  23544786 tatcatgataagcgcttatgtataagctat 23544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 33541866 - 33541837
Alignment:
Q  388 tttatcatgataagcgcttatgtataagct 417  Q
    ||||||||||||||||||||||||||||||    
T  33541866 tttatcatgataagcgcttatgtataagct 33541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 1258 - 1191
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||| |  |||||||  |||||| | |||||| ||||| |||||||||||||||||    
T  1258 ggataaacaacttaattaagtacttatagcataaacgtctatcat-ataagtgcttatgtataagctat 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 2717 - 2784
Alignment:
Q  351 ggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 419  Q
    ||||||||||||||||| |  |||||||  |||||| | |||||| ||||| |||||||||||||||||    
T  2717 ggataaacaacttaattaagtacttatagcataaacgtctatcat-ataagtgcttatgtataagctat 2784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University