View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_40 (Length: 269)
Name: NF15773_low_40
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 26839888 - 26840146
Alignment:
| Q |
1 |
ctttttagttctgctctctgctcaattacttggagctttctatgcaaacaattcaaaagcatggtcaatcaaactcatgaagtttcaaagaaatcatgca |
100 |
Q |
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| T |
26839888 |
ctttttagttctgctctctggtcaattacttggagctttctatgcaaacaattcaaaagcatggtcaatcaaactcatgaagtttcaaagaaatcatgca |
26839987 |
T |
|
| Q |
101 |
aacagtaacatcaaccttaaagacaacaatattcacacgaaacaaagttaagtaaacattaaaagtcaagtttagcaaacaattaacataatttcaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26839988 |
aacagtaacatcaaccttaaagacaacaatattcacacgaaagaaagttaagt-aacattaaaagtcaagtttagcaaacaattaacataatttcaaatg |
26840086 |
T |
|
| Q |
201 |
catagaacaagt-nnnnnnntagtatacttaaagaccccaaacaatggaagcattttctt |
259 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26840087 |
catagaacaagtaaaaaaaatagtatacttaaagaccccaaacaatggaagcattttctt |
26840146 |
T |
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