View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_43 (Length: 256)
Name: NF15773_low_43
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2746315 - 2746074
Alignment:
| Q |
1 |
acttaggtgtaatatttgacattgttcttacaacaattaacgtgtacaattcctacactcattcaacaccttattttctttctaactctcttccaatcac |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2746315 |
acttaggtataatattagacattgttcttacaacaattaacgtgtacactttctacactcattcaacaccttattttttttctaactctctttcaatcac |
2746216 |
T |
|
| Q |
101 |
attacgaatttatca----cacatatcagataactctctcttatctctttaccctctcatgatgtatacaccccaaggggttttacacaacattttcctc |
196 |
Q |
| |
|
|| || ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2746215 |
atcacaaatttatcaatcacacatatcacata--tctctcttatctctttaccctctcatgatgtatacaccccaaggggttttacacaacattttcctc |
2746118 |
T |
|
| Q |
197 |
aatattgttaccttgttcaatattgtttccatgaaatttaacat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2746117 |
aatattgttaccttgttcaatattgtttccatgaaatttaacat |
2746074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 30957630 - 30957672
Alignment:
| Q |
50 |
ttcctacactcattcaacaccttattttctttctaactctctt |
92 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
30957630 |
ttcctacactcattcaacactttattttctctctatctctctt |
30957672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 43239316 - 43239368
Alignment:
| Q |
50 |
ttcctacactcattcaacaccttattttctttctaactctcttccaatcacat |
102 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||| | ||||||||| ||||||| |
|
|
| T |
43239316 |
ttcctacactcgttcagcacctcattttctttcaatctctcttcctatcacat |
43239368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University