View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_44 (Length: 255)

Name: NF15773_low_44
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_44
NF15773_low_44
[»] chr3 (7 HSPs)
chr3 (1-239)||(45168212-45168454)
chr3 (21-104)||(2472720-2472800)
chr3 (54-104)||(5128916-5128966)
chr3 (54-104)||(43303992-43304042)
chr3 (54-130)||(43306677-43306754)
chr3 (1-45)||(5128836-5128879)
chr3 (1-42)||(40593564-40593604)
[»] chr8 (22 HSPs)
chr8 (7-130)||(18468611-18468732)
chr8 (21-102)||(20693776-20693855)
chr8 (54-117)||(23570591-23570654)
chr8 (54-104)||(2189753-2189803)
chr8 (21-104)||(2687719-2687800)
chr8 (54-104)||(22926680-22926730)
chr8 (21-104)||(24731204-24731285)
chr8 (54-104)||(42890399-42890449)
chr8 (54-104)||(42891696-42891746)
chr8 (54-126)||(16598256-16598329)
chr8 (54-130)||(22921855-22921932)
chr8 (23-85)||(2609546-2609605)
chr8 (1-45)||(22520918-22520961)
chr8 (1-45)||(22921969-22922012)
chr8 (54-117)||(22512065-22512128)
chr8 (54-117)||(22519365-22519428)
chr8 (7-49)||(6845269-6845311)
chr8 (54-130)||(6845343-6845420)
chr8 (21-83)||(14130142-14130201)
chr8 (1-45)||(18180802-18180845)
chr8 (1-45)||(22512165-22512208)
chr8 (1-45)||(42891783-42891826)
[»] chr7 (23 HSPs)
chr7 (21-104)||(24840120-24840201)
chr7 (21-96)||(3778748-3778820)
chr7 (21-102)||(1369782-1369861)
chr7 (21-102)||(27142643-27142722)
chr7 (54-117)||(1220459-1220522)
chr7 (23-100)||(4888721-4888795)
chr7 (23-110)||(11228960-11229045)
chr7 (54-130)||(13882691-13882768)
chr7 (54-130)||(13886164-13886241)
chr7 (24-104)||(11000857-11000935)
chr7 (54-104)||(27309646-27309697)
chr7 (54-104)||(859188-859238)
chr7 (54-104)||(1217192-1217242)
chr7 (54-103)||(1883496-1883546)
chr7 (54-105)||(1753628-1753680)
chr7 (54-104)||(5934611-5934662)
chr7 (12-104)||(1365640-1365729)
chr7 (54-103)||(1874545-1874595)
chr7 (54-104)||(30217822-30217871)
chr7 (24-110)||(1786663-1786747)
chr7 (54-110)||(4133299-4133356)
chr7 (21-102)||(8916410-8916489)
chr7 (1-45)||(13882805-13882848)
[»] chr2 (21 HSPs)
chr2 (21-104)||(23457623-23457704)
chr2 (1-45)||(33655554-33655598)
chr2 (21-104)||(21772352-21772432)
chr2 (54-130)||(27952323-27952400)
chr2 (54-130)||(31634111-31634188)
chr2 (7-49)||(31636270-31636312)
chr2 (21-104)||(33051595-33051676)
chr2 (54-104)||(33655635-33655685)
chr2 (54-104)||(36647300-36647350)
chr2 (54-130)||(2155974-2156051)
chr2 (54-130)||(22011443-22011520)
chr2 (54-130)||(31636344-31636421)
chr2 (12-102)||(12966445-12966532)
chr2 (1-45)||(27952437-27952480)
chr2 (1-45)||(27956273-27956316)
chr2 (54-110)||(28737913-28737969)
chr2 (21-102)||(32162002-32162081)
chr2 (27-104)||(15129373-15129447)
chr2 (7-49)||(31634037-31634079)
chr2 (54-130)||(27956159-27956236)
chr2 (54-109)||(23456582-23456638)
[»] chr1 (17 HSPs)
chr1 (12-103)||(31915518-31915606)
chr1 (21-110)||(10927171-10927256)
chr1 (54-130)||(8931227-8931304)
chr1 (7-49)||(8931153-8931195)
chr1 (21-104)||(12944093-12944174)
chr1 (27-110)||(28660771-28660852)
chr1 (21-100)||(23987549-23987630)
chr1 (26-104)||(31913359-31913434)
chr1 (21-105)||(8221465-8221547)
chr1 (25-104)||(26981490-26981568)
chr1 (21-104)||(50713690-50713771)
chr1 (54-103)||(13444021-13444070)
chr1 (1-45)||(50857563-50857606)
chr1 (1-42)||(12486347-12486387)
chr1 (54-104)||(43681468-43681520)
chr1 (54-130)||(50857449-50857526)
chr1 (58-102)||(9194976-9195020)
[»] scaffold0110 (2 HSPs)
scaffold0110 (7-104)||(46765-46860)
scaffold0110 (7-49)||(45376-45418)
[»] scaffold0240 (2 HSPs)
scaffold0240 (21-102)||(1635-1713)
scaffold0240 (23-104)||(14826-14904)
[»] chr6 (16 HSPs)
chr6 (51-110)||(18727112-18727171)
chr6 (7-49)||(3535967-3536009)
chr6 (7-49)||(3542178-3542220)
chr6 (54-104)||(29340838-29340888)
chr6 (54-130)||(3536041-3536118)
chr6 (54-130)||(30049923-30050000)
chr6 (7-50)||(30049849-30049892)
chr6 (7-50)||(30052136-30052179)
chr6 (54-104)||(30052210-30052260)
chr6 (54-130)||(3542252-3542329)
chr6 (23-101)||(33615538-33615614)
chr6 (1-45)||(11190426-11190469)
chr6 (12-100)||(12882091-12882177)
chr6 (21-104)||(1127231-1127312)
chr6 (12-84)||(27822170-27822239)
chr6 (54-103)||(11658939-11658988)
[»] chr4 (9 HSPs)
chr4 (12-104)||(40206117-40206206)
chr4 (21-102)||(38888023-38888102)
chr4 (21-101)||(10494880-10494958)
chr4 (54-104)||(6659362-6659412)
chr4 (21-85)||(9260550-9260611)
chr4 (21-104)||(18689552-18689633)
chr4 (1-42)||(13085214-13085254)
chr4 (1-45)||(6659449-6659492)
chr4 (21-102)||(7634057-7634136)
[»] scaffold0330 (1 HSPs)
scaffold0330 (54-102)||(17647-17695)
[»] scaffold0054 (1 HSPs)
scaffold0054 (54-104)||(37718-37768)
[»] chr5 (6 HSPs)
chr5 (12-84)||(19497356-19497425)
chr5 (54-130)||(21848970-21849047)
chr5 (21-125)||(26140320-26140422)
chr5 (54-104)||(40778818-40778868)
chr5 (54-102)||(18252423-18252472)
chr5 (1-41)||(40778909-40778948)
[»] scaffold0251 (1 HSPs)
scaffold0251 (21-102)||(9679-9759)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-104)||(145711-145792)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45168454 - 45168212
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtt 100  Q
    ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45168454 taaaattattcgagattttctctcaatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtttatttcaatctaggtt 45168355  T
Q  101 tagcatttgcgaacccttgcttcc----gtactgtgacaatatccatattcaatactaaaatgtttagataaacattgttgttgattatgaacatcaacc 196  Q
    ||||| |||| |||||||||||||    ||||  |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  45168354 tagcacttgctaacccttgcttccttccgtacaatgacaagatccatattcaatactaaaatgtttaaataaacattgttgttaattatgaacatcaacc 45168255  T
Q  197 ttttgaaaaatagcataaacaaaaattgattactttaaaatag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45168254 ttttgaaaaatagcataaacaaaaattgattactttaaaatag 45168212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 2472800 - 2472720
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  2472800 tctcaatttctggtggattccggaaccctat---tttcacaagtttgtcggttgcaaacttgtctctttcaatttaggtttagc 2472720  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 5128916 - 5128966
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  5128916 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 5128966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 43304042 - 43303992
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  43304042 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 43303992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 43306754 - 43306677
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||| | |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  43306754 ttttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 43306677  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5128836 - 5128879
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  5128836 taaaattattcgagattttctctcaa-ttctggtggattccggaa 5128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40593604 - 40593564
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccg 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  40593604 taaaattattcgagattttctctcaattt-tggtggattccg 40593564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 18468611 - 18468732
Alignment:
Q  7 tattcgaga-ttttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagca 105  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||| ||||||  |||| | |||||||||||     
T  18468611 tattcgagacttttctctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcg 18468707  T
Q  106 tttgcgaacccttgcttccgtactg 130  Q
     |||| |||||||||||| ||||||    
T  18468708 cttgctaacccttgcttctgtactg 18468732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 20693776 - 20693855
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 102  Q
    |||||||||||| || ||||||||||| |||   |||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  20693776 tctcaatttctgatggattccggaaccatat---tttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggttta 20693855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 23570591 - 23570654
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 117  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||    
T  23570591 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccct 23570654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 2189803 - 2189753
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||    
T  2189803 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagc 2189753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 2687719 - 2687800
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 104  Q
    ||||||||||| ||| ||||  |||||||||   |||||||||||||||| ||||||||||||| | |||| |||||||||||||    
T  2687719 tctcaatttcttgtggattctagaaccctat---tttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagc 2687800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 22926730 - 22926680
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  22926730 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 22926680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 24731204 - 24731285
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 104  Q
    |||||||||||| ||||||||| ||| ||||   |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  24731204 tctcaatttctgatgaattccgaaactctat---tttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagc 24731285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 42890399 - 42890449
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  42890399 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 42890449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 42891746 - 42891696
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  42891746 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 42891696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 16598256 - 16598329
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttc-aatctaggtttagcatttgcgaacccttgcttccgt 126  Q
    |||||||||||||||||  ||||||||||||| |||| |||||| |||||||  |||| |||| ||||||||||    
T  16598256 ttttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgctaaccattgcttccgt 16598329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 22921932 - 22921855
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||| ||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  22921932 ttttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 22921855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 2609605 - 2609546
Alignment:
Q  23 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt 85  Q
    |||||||||||||||||| | ||||||||   |||||||||||||||  ||||||||||||||    
T  2609605 tcaatttctggtgaattctgtaaccctat---tttcacaagtttgtcacttgcaaacttgttt 2609546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22520961 - 22520918
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  22520961 taaaattattcgagattttctctcaa-ttctggtggattccggaa 22520918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22922012 - 22921969
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  22922012 taaaattattcgagattttctctcaa-ttctggtggattccggaa 22921969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 22512128 - 22512065
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 117  Q
    ||||||||||||||||| |||||||||||||  |||| | |||||||||||  |||| ||||||    
T  22512128 ttttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccct 22512065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 22519428 - 22519365
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 117  Q
    ||||||||||||||||| |||||||||||||  |||| | |||||||||||  |||| ||||||    
T  22519428 ttttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccct 22519365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 6845269 - 6845311
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  6845269 tattcgagattttctctcaatttttggtggattccgaaaccct 6845311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 6845343 - 6845420
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||| ||| ||| |||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  6845343 ttttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 6845420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 14130142 - 14130201
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgt 83  Q
    ||||||||||||||| ||||||||||| ||   ||||||||| ||| ||| ||||||||||||    
T  14130142 tctcaatttctggtggattccggaacctta---ttttcacaaatttatcgcttgcaaacttgt 14130201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18180845 - 18180802
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||    
T  18180845 taaaattattcgagattttctctcaa-ttctggtggattctggaa 18180802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22512208 - 22512165
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||    
T  22512208 taaaattattcgagattttctctcaa-ttctggtggatttcggaa 22512165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42891826 - 42891783
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  42891826 taaaattatttgagattttctctcaa-ttctggtggattccggaa 42891783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 24840120 - 24840201
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  24840120 tctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 24840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 3778820 - 3778748
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatcta 96  Q
    ||||||||||||||| |||||||||||||||   |||||||||||| ||| ||||||||||||| |||||||||||    
T  3778820 tctcaatttctggtggattccggaaccctat---tttcacaagtttctcgcttgcaaacttgttcatttcaatcta 3778748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 1369782 - 1369861
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 102  Q
    ||||||||||||||| ||||||||||||||   |||| |||||||| ||| ||||||||||||||  ||||||||||||||||    
T  1369782 tctcaatttctggtggattccggaacccta---ttttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggttta 1369861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 27142643 - 27142722
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 102  Q
    |||||||||||||||  ||| ||||||||||   |||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  27142643 tctcaatttctggtggtttcaggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggttta 27142722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 1220522 - 1220459
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 117  Q
    ||||||||||||||||| ||||||||||||| ||||| || |||||||||| ||||| ||||||    
T  1220522 ttttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggtttagcgtttgctaaccct 1220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 4888795 - 4888721
Alignment:
Q  23 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtt 100  Q
    |||||||||||||||||||||||| ||||   ||||||| |||||||| |||||||||||||  |||| |||||||||    
T  4888795 tcaatttctggtgaattccggaactctat---tttcacaggtttgtcgcttgcaaacttgttcttttctatctaggtt 4888721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11228960 - 11229045
Alignment:
Q  23 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 110  Q
    ||||||||||||| |||| ||||||||   ||||||||| ||||||||  |||||||||||| | ||||||||||||||||||| ||||    
T  11228960 tcaatttctggtggattctggaaccct---tttttcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagcacttgc 11229045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 13882768 - 13882691
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  13882768 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 13882691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 13886241 - 13886164
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  13886241 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 13886164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 11000935 - 11000857
Alignment:
Q  24 caatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    |||||||||||| ||||| ||||||||   ||||||| ||||||||| |||| |||||||||  ||||||||||||||||||    
T  11000935 caatttctggtggattcctgaacccta---ttttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagc 11000857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 27309697 - 27309646
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  27309697 ttttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 27309646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 859238 - 859188
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  859238 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 1217242 - 1217192
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  1217242 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 1217192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 1883496 - 1883546
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttag 103  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  1883496 ttttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttag 1883546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 1753680 - 1753628
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagca 105  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||||||||    
T  1753680 ttttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggtttagca 1753628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 5934611 - 5934662
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  5934611 ttttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagc 5934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 1365640 - 1365729
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||| ||| ||||||||| ||||| |||  ||||||||||   |||||||||||  ||| || ||||||||||  ||||||||||||||||||    
T  1365640 gagagtttttctcaatttttggtggattatggaaccctat---tttcacaagttcatcgcttacaaacttgttcctttcaatctaggtttagc 1365729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 1874545 - 1874595
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttag 103  Q
    ||||||||||||||||| ||||||||||||||  |||||||| ||||||||    
T  1874545 ttttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttag 1874595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 30217822 - 30217871
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||| |||||| || ||||||||||||||||||    
T  30217822 ttttcacaagtttgtcgcttgcgaacttg-ttctttcaatctaggtttagc 30217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 1786663 - 1786747
Alignment:
Q  24 caatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 110  Q
    ||||||||| || |||| ||||||||||   |||| || |||||||| ||||||||||||| | |||| |||||||||||||| ||||    
T  1786663 caatttctgatggattctggaaccctat---tttcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagcacttgc 1786747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 4133356 - 4133299
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttat-ttcaatctaggtttagcatttgc 110  Q
    ||||||||||||||||| ||| ||| ||||| || ||||||||| |||||||||||||    
T  4133356 ttttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgc 4133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 8916489 - 8916410
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 102  Q
    ||||||||||||||| ||||| |||| ||||   || ||||||||| ||| ||||||||||||| | ||| ||||||||||||    
T  8916489 tctcaatttctggtggattccagaactctat---ttccacaagtttatcgtttgcaaacttgttcattttaaatctaggttta 8916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13882848 - 13882805
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  13882848 taaaattatttgagattttctctcaa-ttctggtggattccggaa 13882805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 23457623 - 23457704
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggtttagc 104  Q
    ||||||||| ||||| |||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23457623 tctcaatttttggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagc 23457704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33655554 - 33655598
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  33655554 taaaattattcgagattttctctcaatttctggtggattccggaa 33655598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 21772352 - 21772432
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||| || || |||| ||||||||||   ||||| |||||||||| |||||||||||||| |||||||||| |||||||    
T  21772352 tctcaatttgtgatggattcaggaaccctat---tttcataagtttgtcgcttgcaaacttgtttttttcaatctaagtttagc 21772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 27952400 - 27952323
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  27952400 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 27952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 31634111 - 31634188
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| | |||||||||||  |||| ||||||||||||| ||||| ||||||  ||||||||||||    
T  31634111 ttttcacaagtttgtcgctagcaaacttgttcttttctatctaggtttagcgtttgctaaccctacgcttccgtactg 31634188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31636270 - 31636312
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  31636270 tattcaagattttctctcaatttctggtggattccggaaccct 31636312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 33051595 - 33051676
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 104  Q
    ||||||||||| ||| ||||| |||||||||   ||||| |||||||||| ||||||||||||| | ||||||| ||||||||||    
T  33051595 tctcaatttctagtggattccagaaccctat---tttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagc 33051676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 33655635 - 33655685
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||| | |||| |||||||||||||    
T  33655635 ttttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagc 33655685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 36647300 - 36647350
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||    
T  36647300 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagc 36647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 2155974 - 2156051
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| | |||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  2155974 ttttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 2156051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 22011443 - 22011520
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||  |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  22011443 ttttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 22011520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 31636344 - 31636421
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| ||||||||| |||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  31636344 ttttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 31636421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 12966445 - 12966532
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 102  Q
    |||| ||| ||||||||| ||||| ||| |||||||||||   ||||||||||| |||| |||| ||||||||  ||||||||||| ||||    
T  12966445 gagagtttttctcaatttttggtggatttcggaaccctat---tttcacaagttcgtcgcttgcgaacttgttcttttcaatctagattta 12966532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27952480 - 27952437
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  27952480 taaaattattcgagattttctctcaa-ttctggtggattccggaa 27952437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27956316 - 27956273
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  27956316 taaaattattcgagattttctctcaa-ttctggtggattccggaa 27956273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 28737913 - 28737969
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgc 110  Q
    |||||| |||||||||| ||||||||||| |  ||||||||||||||||||| ||||    
T  28737913 ttttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttgc 28737969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 32162081 - 32162002
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 102  Q
    ||||| ||||||||| ||||| |||||||||   |||||||||||||||  ||||||||||||||  |||| |||||||||||    
T  32162081 tctcagtttctggtggattcctgaaccctat---tttcacaagtttgtcacttgcaaacttgtttcttttcgatctaggttta 32162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 15129373 - 15129447
Alignment:
Q  27 tttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||  |||| ||||||||||   |||||||||||||||| |||| ||||||||  |||| |||||||||||||    
T  15129373 tttctggttgattctggaaccctat---tttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagc 15129447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31634037 - 31634079
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    |||| |||||||||||||||||||||||| |||||| ||||||    
T  31634037 tatttgagattttctctcaatttctggtggattccgaaaccct 31634079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 27956236 - 27956159
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    |||||| | |||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  27956236 ttttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 27956159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 23456582 - 23456638
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagcatttg 109  Q
    |||||| |||||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  23456582 ttttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggtttaacatttg 23456638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 31915518 - 31915606
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 103  Q
    |||| ||| ||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||| |||||| ||| ||||||    
T  31915518 gagagtttttctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttctttcaacctaagtttag 31915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 10927171 - 10927256
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 110  Q
    ||||||||||||||| |||||||||||||     |||||||||||||||| ||||||||||||| | ||||| |||||||||||| |||||    
T  10927171 tctcaatttctggtggattccggaaccct-----tttcacaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgc 10927256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 8931227 - 8931304
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||  |||| ||||||  ||||||||||||    
T  8931227 ttttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgctaaccctacgcttccgtactg 8931304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 8931153 - 8931195
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  8931153 tattcgagattttctctcaatttctggtggattccggaaccct 8931195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 12944093 - 12944174
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||||||||| ||||| ||||||||| |||   |||||||||||| ||||||||||||||  ||||||||||| ||||||    
T  12944093 tctcaatttctggtggattccagaaccctattttt---acaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagc 12944174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 28660852 - 28660771
Alignment:
Q  27 tttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatt-tcaatctaggtttagcatttgc 110  Q
    ||||||||| ||| |||||||||||   |||||||||||||||| |||||||||||||| || || ||||||||||||| |||||    
T  28660852 tttctggtggatttcggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgc 28660771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 23987549 - 23987630
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatat-ttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtt 100  Q
    ||||||||||||||| ||||||||||| | ||| ||||||||||||||||| ||||||| ||||| | |||| |||||||||    
T  23987549 tctcaatttctggtggattccggaaccttctatattttcacaagtttgtcgtttgcaaagttgttctttttctatctaggtt 23987630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 31913359 - 31913434
Alignment:
Q  26 atttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||||||||| ||| ||||| ||||| |||   |||||||||||| |||||||||||||| |||||| |||||||||||    
T  31913359 atttctggtggatttcggaaacctattttt---acaagtttgtcgcttgcaaacttgtttctttcaacctaggtttagc 31913434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 8221465 - 8221547
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttat-ttcaatctaggtttagca 105  Q
    ||||||||||||||| ||||| ||||||||   |||||| |||||||||| |||||||||||| | | |||||||| |||||||||    
T  8221465 tctcaatttctggtggattccagaacccta---ttttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagca 8221547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 26981490 - 26981568
Alignment:
Q  25 aatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||||||| || ||| || |||| ||||||||| |||||||| ||| |||||||||||||| ||||||||||| ||||||    
T  26981490 aatttctgatggatttcgaaaccatatattttt-acaagtttttcgcttgcaaacttgtttctttcaatctagatttagc 26981568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 50713690 - 50713771
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgt-ttatttcaatctaggtttagc 104  Q
    ||||||||||||||| |||||| |||||||   |||||||||||||||||  ||| ||||||| |  ||||||||||||||||||    
T  50713690 tctcaatttctggtggattccgaaacccta---ttttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagc 50713771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 13444070 - 13444021
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 103  Q
    ||||||||||||||||| |||||||||||||  |||| ||||||||||||    
T  13444070 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttag 13444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50857606 - 50857563
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  50857606 taaaattattcgagattttctctcaa-ttctggtggattccggaa 50857563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12486387 - 12486347
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccg 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  12486387 taaaattattcgagattttctctcaattt-tggtggattccg 12486347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 43681468 - 43681520
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttg--tttatttcaatctaggtttagc 104  Q
    ||||||||| ||||||| |||||||||||  ||| ||||||||||||||||||    
T  43681468 ttttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagc 43681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 50857526 - 50857449
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| || ||||||| ||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  50857526 ttttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 50857449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 9195020 - 9194976
Alignment:
Q  58 cacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 102  Q
    |||| |||||||| ||||||||||||||  |||||||||||||||    
T  9195020 cacatgtttgtcgcttgcaaacttgtttcattcaatctaggttta 9194976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 46860 - 46765
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||   |||| | | |||||||| |||||||||||||  |||| |||||||||||||    
T  46860 tattcgagattttctctcaatttttggtggattccggaaccttaa--ttttgataggtttgtcgcttgcaaacttgttcttttctatctaggtttagc 46765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 45418 - 45376
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  45418 tattcgagattttctctcaatttctggtggattctggaaccct 45376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 1635 - 1713
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 102  Q
    |||||| |||||||| ||||| ||||| |||   ||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  1635 tctcaaattctggtggattccagaaccatat---tttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggttta 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 14826 - 14904
Alignment:
Q  23 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||| ||||| ||||||||  |||||   |||||||||||| ||| |||| ||||| |||||||||||| |||||||||    
T  14826 tcaatttttggtggattccggattcctat---tttcacaagtttttcgcttgccaacttatttatttcaatcaaggtttagc 14904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 18727112 - 18727171
Alignment:
Q  51 tatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgc 110  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||||||||||| |||||    
T  18727112 tatttttcacaagtttgtcgcttgcgaacttgtgtttttcaatctaggtttagcgtttgc 18727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 3535967 - 3536009
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3535967 tattcgagattttctctcaatttctggtggattccggaaccct 3536009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 3542178 - 3542220
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaaccct 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3542178 tattcgagattttctctcaatttctggtggattccggaaccct 3542220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 29340888 - 29340838
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  29340888 ttttcacaagtttgtcgcttgcaaacttgtttttttctatctaggtttagc 29340838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 3536041 - 3536118
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  3536041 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 3536118  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 30049923 - 30050000
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccctt-gcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| || ||||||||||  |||| ||||||| ||||||||||||    
T  30049923 ttttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgctaacccttcgcttccgtactg 30050000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 30049849 - 30049892
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaacccta 50  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  30049849 tattcgagattttctctcaatttttggtggattccggaacccta 30049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 30052136 - 30052179
Alignment:
Q  7 tattcgagattttctctcaatttctggtgaattccggaacccta 50  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  30052136 tattcgagattttctctcaatttttggtggattccggaacccta 30052179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 30052210 - 30052260
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  30052210 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 30052260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 3542252 - 3542329
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| || ||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  3542252 ttttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 3542329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 33615614 - 33615538
Alignment:
Q  23 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttt 101  Q
    ||||||| |||||||||| | ||||||||   |||||||||||||||| ||||||||||||| | |||| ||||||||||    
T  33615614 tcaatttatggtgaattctgaaaccctat---tttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11190426 - 11190469
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  11190426 taaaattattcgagattttctctcaa-ttctggtggattccggaa 11190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 12882091 - 12882177
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatt-tcaatctaggtt 100  Q
    |||| ||| ||||||||||||||| |||||| |||||||   ||||||||||||||||| ||  |||||||| | || ||||||||||||    
T  12882091 gagagtttttctcaatttctggtggattccgaaacccta---ttttcacaagtttgtcgctttaaaacttgtctcttctcaatctaggtt 12882177  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 1127231 - 1127312
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||| ||||| |||||| ||| ||||   |||||||| ||||||| ||||||||||||||  ||| ||||||||||||||    
T  1127231 tctcaatttttggtgtattccgaaacactat---tttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagc 1127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 27822239 - 27822170
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt 84  Q
    |||| ||| ||||||||||||||| ||| ||||||||| |   |||||||||||||||| ||| |||||||||    
T  27822239 gagagtttttctcaatttctggtggatttcggaaccctgt---tttcacaagtttgtcgcttgaaaacttgtt 27822170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 11658939 - 11658988
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 103  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  11658939 ttttcacaagtttatcgcttgcaaatttgttcttttcaatctaggtttag 11658988  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 40206117 - 40206206
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||| ||| |||||||||||||||||||||| ||| ||||   |||||||||||||||| |||| ||||||| | ||||||| ||| ||||||    
T  40206117 gagaatttttctcaatttctggtgaattccgaaacactat---tttcacaagtttgtcgcttgcgaacttgtctctttcaatttagatttagc 40206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 38888102 - 38888023
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 102  Q
    |||||||||||  || |||||| ||||||||   |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  38888102 tctcaatttctaatggattccgaaaccctat---tttcacaagtttgtcgcttgcaaatttgtttattttcaatctaggttta 38888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 10494880 - 10494958
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttt 101  Q
    |||||||||||||||||||||||||| |||   |||||||| |||||||  ||||||||||||||  |||| ||||||||||    
T  10494880 tctcaatttctggtgaattccggaactcta---ttttcacaggtttgtcacttgcaaacttgtttcttttccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 6659412 - 6659362
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    ||||||||||||||||| |||||||||||||  |||| |||||| ||||||    
T  6659412 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagc 6659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 9260550 - 9260611
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt 85  Q
    ||||||||||||||| |||| | ||||||||   |||| ||||||||||| ||||||||||||||    
T  9260550 tctcaatttctggtggattctgaaaccctat---tttcgcaagtttgtcgtttgcaaacttgttt 9260611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 18689633 - 18689552
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 104  Q
    ||||||||||||||| |||| | |||||||   |||| ||||||||||||  ||||||||| |||  ||||||||||||||||||    
T  18689633 tctcaatttctggtggattctgcaacccta---tttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagc 18689552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13085254 - 13085214
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccg 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  13085254 taaaattattcgagattttctctcaattt-tggtggattccg 13085214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6659492 - 6659449
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattccggaa 45  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  6659492 taaaactattcgagattttctctcaa-ttctggtggattccggaa 6659449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 7634057 - 7634136
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttta 102  Q
    ||||||||||||||| ||||| |||| |||   ||| ||||||||| ||| |||||||||||||   ||||||||||||||||    
T  7634057 tctcaatttctggtggattccagaactcta---tttccacaagtttatcgtttgcaaacttgttccttttcaatctaggttta 7634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 17647 - 17695
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 102  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  17647 ttttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggttta 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 37718 - 37768
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  37718 ttttcataagtttgtcgcttgcaaacttgttcttttcaatctaggtttagc 37768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 19497425 - 19497356
Alignment:
Q  12 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt 84  Q
    |||||||| ||||||||| || || ||| |||||||||||   |||||||||||||||| |||||||||||||    
T  19497425 gagattttttctcaatttttgatggatttcggaaccctat---tttcacaagtttgtcgcttgcaaacttgtt 19497356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 21849047 - 21848970
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 130  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||| ||  |||| ||||||  ||||||||||||    
T  21849047 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgctaaccctacgcttccgtactg 21848970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 26140320 - 26140422
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggtttagcatttgcgaacccttg 119  Q
    ||||||||| ||||| ||||  |||||||||   ||||| |||||||||| |||||| |||||||  ||||||||||| |||||| ||||| ||||  ||    
T  26140320 tctcaatttttggtggattcttgaaccctat---tttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgctaacctatg 26140416  T
Q  120 cttccg 125  Q
    ||||||    
T  26140417 cttccg 26140422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 40778868 - 40778818
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 104  Q
    |||| |||||||||||| |||||||||||||  |||| |||||||||||||    
T  40778868 tttttacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 40778818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 18252423 - 18252472
Alignment:
Q  54 ttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttta 102  Q
    |||||||| |||||||| ||||||||||||| |||||| |||||||||||    
T  18252423 ttttcacaggtttgtcgcttgcaaacttgttctatttctatctaggttta 18252472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40778948 - 40778909
Alignment:
Q  1 taaaattattcgagattttctctcaatttctggtgaattcc 41  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  40778948 taaaattattcgagattttctctcaa-ttctggtggattcc 40778909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 9679 - 9759
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaa--gtttgtcggttgcaaacttgtttatttcaatctaggttta 102  Q
    ||||||||||||||| ||| ||||||||||   |||||||||  ||| |||| ||| |||||||||  ||||||||||||||||    
T  9679 tctcaatttctggtggatttcggaacccta---ttttcacaagtgttagtcgcttggaaacttgttcttttcaatctaggttta 9759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 145711 - 145792
Alignment:
Q  21 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttg-tttatttcaatctaggtttagc 104  Q
    ||||||||| ||||| ||||  ||||||||| |||   ||||| |||||| ||||||||||| ||| ||||||||||||||||||    
T  145711 tctcaatttttggtggattctagaaccctattttt---acaagcttgtcgcttgcaaacttgatttttttcaatctaggtttagc 145792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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