View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_48 (Length: 249)
Name: NF15773_low_48
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 19846176 - 19845953
Alignment:
| Q |
18 |
atcaagaaaattgaaaaacagattttatataatagaacaaaccaaaacagaacagtagaattatatgataaaaaaccaagaccggtacctgcttctccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19846176 |
atcaagaaaattgaaaaacagattttatataattgatcaaaccaaaacagaacagtagaattatatgataaaaaaccaagaccggtacctgcttctccat |
19846077 |
T |
|
| Q |
118 |
aagcatagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattaga |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19846076 |
aagcgtagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattaga |
19845977 |
T |
|
| Q |
218 |
accatctccgatacttcctatgct |
241 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
19845976 |
accatctccgatacttccaatgct |
19845953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 22691745 - 22691840
Alignment:
| Q |
152 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattatta------gaaccatctccgatacttcctatgct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
22691745 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctattgccttccaaactattagaattggaaccatctccgatacttccaatgct |
22691840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 22691623 - 22691698
Alignment:
| Q |
22 |
agaaaattgaaaaacagattttatataatagaa-caaaccaaaacagaacagtagaattatatgataaaaaaccaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22691623 |
agaaaattgaaaaacagattttatataatttaaacaaaccaaaacaaaacagtagaattatatgataaaaaaccaa |
22691698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 46899223 - 46899146
Alignment:
| Q |
145 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaaccat |
222 |
Q |
| |
|
||||||||||| ||||||| |||| | |||||||||||||||||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
46899223 |
gacacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgttagaaccat |
46899146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 46890619 - 46890548
Alignment:
| Q |
145 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattag |
216 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||| ||||||||| || ||| | |||||||||||||||| |
|
|
| T |
46890619 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
46890548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 46864077 - 46864037
Alignment:
| Q |
157 |
tcttccagtaagtgccccttgctggcttgttcacagaccta |
197 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
46864077 |
tcttccaataagtgcccctagctggcttgttcacagcccta |
46864037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University