View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_49 (Length: 249)
Name: NF15773_low_49
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_49 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 8158825 - 8159056
Alignment:
| Q |
18 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158825 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaag |
8158924 |
T |
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| Q |
118 |
tattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158925 |
tattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggt |
8159024 |
T |
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| Q |
218 |
gattttatcacaaatgttaacacgggtaagaa |
249 |
Q |
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|||||||| |||||||||||||| |||||||| |
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| T |
8159025 |
gattttattacaaatgttaacactggtaagaa |
8159056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 18702137 - 18701908
Alignment:
| Q |
20 |
atggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagta |
119 |
Q |
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| T |
18702137 |
atggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagta |
18702038 |
T |
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| Q |
120 |
ttgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtga |
219 |
Q |
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||||||| |||||||||||||||||||| | || |||| || || |||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
18702037 |
ttgatgcaccatttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaagaagggtga |
18701938 |
T |
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| Q |
220 |
ttttatcacaaatgttaacacgggtaagaa |
249 |
Q |
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|||||| |||||||||||||| |||||||| |
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| T |
18701937 |
ttttattacaaatgttaacactggtaagaa |
18701908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 4084649 - 4084418
Alignment:
| Q |
18 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
4084649 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaag |
4084550 |
T |
|
| Q |
118 |
tattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggt |
217 |
Q |
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||||||||| |||||||||| |||||||||| | |||| ||||| || ||||||||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
4084549 |
tattgatgcaccatttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttatctaagaatctatcagggtgttatcaagaagggt |
4084450 |
T |
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| Q |
218 |
gattttatcacaaatgttaacacgggtaagaa |
249 |
Q |
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|||||||| |||||||||||||| |||||||| |
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| T |
4084449 |
gattttattacaaatgttaacaccggtaagaa |
4084418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 43896531 - 43896300
Alignment:
| Q |
18 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaag |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43896531 |
ttatggagggtgtaattaggtatttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctggaag |
43896432 |
T |
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| Q |
118 |
tattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggt |
217 |
Q |
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|||||||| |||||||||||||||| |||| || | | ||||| || | | ||||||| |||||||| |||||||||||||||||||||||| |
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| T |
43896431 |
cattgatgcgccatttgttgcaaaggttttcacaaatgtgattaggaatgatggattagtaacttatctaagaatctatcagggtgttattaagaagggt |
43896332 |
T |
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| Q |
218 |
gattttatcacaaatgttaacacgggtaagaa |
249 |
Q |
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|||||||| |||||||||||||| |||||||| |
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| T |
43896331 |
gattttattacaaatgttaacactggtaagaa |
43896300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 44312753 - 44312533
Alignment:
| Q |
29 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctc |
128 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| | |
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| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
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| Q |
129 |
catttgttgcaaaggctttcgtaacttggtataggat---gtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtgattttat |
225 |
Q |
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||||||| ||||||| |||| || | ||||||||| ||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
44312653 |
catttgtagcaaaggttttcacaaatatgtataggattaggtactt---attaacttatctaagaatctatcagggtgttattaagaagggtgattttat |
44312557 |
T |
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| Q |
226 |
cacaaatgttaacacgggtaagaa |
249 |
Q |
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||||| |||||||| |||||||| |
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| T |
44312556 |
tacaaacgttaacactggtaagaa |
44312533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 44301879 - 44301646
Alignment:
| Q |
18 |
ttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaag |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
44301879 |
ttatggaggatgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaag |
44301780 |
T |
|
| Q |
118 |
tattgatgctccatttgttgcaaaggctttcgtaacttggtatag----gatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaa |
213 |
Q |
| |
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| ||||||| |||||||| ||||||| |||| || || |||| | |||| ||| ||||||| |||||||| |||||||||||||| ||||| |
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| T |
44301779 |
tgttgatgcgccatttgtagcaaaggttttcacaaatttgtattggagtgatggatt--cttttaacttgtctaagaatctatcagggtgttatcaagaa |
44301682 |
T |
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| Q |
214 |
gggtgattttatcacaaatgttaacacgggtaagaa |
249 |
Q |
| |
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|||||||||||| |||||||||||||| ||| |||| |
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| T |
44301681 |
gggtgattttattacaaatgttaacactggtgagaa |
44301646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 44306981 - 44306754
Alignment:
| Q |
22 |
ggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtatt |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |
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| T |
44306981 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtatt |
44306882 |
T |
|
| Q |
122 |
gatgctccatttgttgcaaaggctttcgtaact--tggt-ataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtg |
218 |
Q |
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||||| ||||||||||||||||||||| || | | | | |||| | || ||||||||| |||||||| |||||||||||||||||||||| || |
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| T |
44306881 |
gatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaacttatctaagaatctatcagggtgttattaagaaggatg |
44306785 |
T |
|
| Q |
219 |
attttatcacaaatgttaacacgggtaagaa |
249 |
Q |
| |
|
||||||| |||||||||||||| ||| |||| |
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| T |
44306784 |
attttattacaaatgttaacactggtgagaa |
44306754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 35856591 - 35856798
Alignment:
| Q |
38 |
tatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttg |
137 |
Q |
| |
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||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| || ||||| | |
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| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
138 |
caaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtgattttatcacaaatgttaa |
237 |
Q |
| |
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|| ||||||| | | |||||||| || |||||||| || |||||||| |||||||| ||||||| || || |||||||| || |||||||| |
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| T |
35856691 |
cattggctttcacga----gcataggatgctttgtaaattaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaa |
35856786 |
T |
|
| Q |
238 |
cacgggtaagaa |
249 |
Q |
| |
|
||| ||| |||| |
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| T |
35856787 |
cactggtgagaa |
35856798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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