View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_5 (Length: 492)
Name: NF15773_low_5
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 127 - 490
Target Start/End: Original strand, 24984767 - 24985130
Alignment:
| Q |
127 |
accttcatcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaagttttttataccaacaaatttccttt |
226 |
Q |
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| T |
24984767 |
accttcatcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaagttttttataccaacaaattttcttt |
24984866 |
T |
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| Q |
227 |
tgtcagttaaaaatacgaaagttgcagatctcaatcgttcgatgaaaatcatataactcgtatttcgacttaaccaattcaactttacaatacaagcttt |
326 |
Q |
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| T |
24984867 |
tgtcagttaaaaatacgaaagttacagatctcaatcgttcgatgaaaatcatataactcatatttcgacttaaccaattcaactttacagtacaagcttt |
24984966 |
T |
|
| Q |
327 |
gatcatgttcatttttatattaaaattcaatttgatggagtcatataagcaactattgaattcatcaaatggtcaagatgtctaaattcaacatattgac |
426 |
Q |
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| T |
24984967 |
gatcatgttcatttttatattaaaattcaatttgatggagtcatataagcaactattgaattcatcaaatggtcaagatgtctaaattcaacatattgac |
24985066 |
T |
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| Q |
427 |
ttcaagatgtctagacttttattttgacttcaacatattgacttcataaattcttttcactcga |
490 |
Q |
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| T |
24985067 |
ttcaagatgtctagacttttattttgacttcaacatattgacttcaaaaattcttttaactcga |
24985130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 24984660 - 24984731
Alignment:
| Q |
20 |
aggtaaacacaaattcacatctatatctatatatagttatttacaattatgttatcatatagtttctaatta |
91 |
Q |
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| T |
24984660 |
aggtaaacacaaattcacatctatatctatatatagttatttacaattatgttatcatatagtttctaatta |
24984731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 24992945 - 24993011
Alignment:
| Q |
134 |
tcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaa |
200 |
Q |
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||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24992945 |
tcaatcaaagtctgaacctcaacgtgcttttcctcggatttttggccatgaagcttccgggtatgaa |
24993011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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