View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_6 (Length: 481)
Name: NF15773_low_6
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 208 - 481
Target Start/End: Complemental strand, 43051142 - 43050869
Alignment:
| Q |
208 |
ttaatcggaatcctaacacggcatataatataatttcatatatttactacttagaccaactaaccacatattagttctacccggcaatcaagggccaact |
307 |
Q |
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| T |
43051142 |
ttaatcggaatcctaacacggcatataatataatttcatatatttactacttagaccaactaaccacatattagttctactcagcaatcaagggccaact |
43051043 |
T |
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| Q |
308 |
ttatataaactgtacaaactaacagtaacatgagggatatttaagctatagattttaagcacatggtatattgatcttgatctcagagaacataaactag |
407 |
Q |
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| T |
43051042 |
ttatataaactgtacaaactaacagtaacacgagggatatttaagctatagattttaagcacatggtatattgatcttgatctcagagaacataaactag |
43050943 |
T |
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| Q |
408 |
ttgtaaaattaattagcaaaaataatattgacctgctccagaaagcgcagcgcacagagtccagccatctgatt |
481 |
Q |
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| T |
43050942 |
ttgtaaaattaattagcaaaaataatattgacctgctccagaaagcgcagcgcacagagtccagccatctgatt |
43050869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 214 - 481
Target Start/End: Complemental strand, 43035146 - 43034892
Alignment:
| Q |
214 |
ggaatcctaacacggcatataatataatttcatatatttactacttagaccaactaaccacatattagttctacccggcaatcaagggccaactttatat |
313 |
Q |
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| T |
43035146 |
ggaatcctaacacggcataaaatatat----atatatttactacttagaccaaccaaccacatattagttctactaaacaatcaagtgcctgctttatat |
43035051 |
T |
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| Q |
314 |
aaactgtacaaactaacagtaacatgagggatatttaagctatagattttaagcacatggtatattgatcttgatctcagagaacataaactagttgtaa |
413 |
Q |
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| T |
43035050 |
aaactgtacaaactaacaggaacacgagggaaatttaagctatagatattaagcacatggtatattcaact--------cagaacataaactagttgt-a |
43034960 |
T |
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| Q |
414 |
aattaattagcaaaaataatattgacctgctccagaaagcgcagcgcacagagtccagccatctgatt |
481 |
Q |
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| T |
43034959 |
aattaaatagcaaaaataatatttacctgctccagaaagcgcagagcatagagtccagccatctgatt |
43034892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 43051342 - 43051224
Alignment:
| Q |
9 |
gactgaaatgaagcacacaatttaatagacggtattctctatgtgaatattacggaaaatgagtcaaaaatgacaacaagaaatt-aagtagtagaaact |
107 |
Q |
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| T |
43051342 |
gactgaatagaagcacacaatttaatagacggtattctctatgtgaatattacggaaaatgagtcaaaaatgacaacaagaaattcaagtagtagaaact |
43051243 |
T |
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| Q |
108 |
gtaggaatggaaggggaag |
126 |
Q |
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| T |
43051242 |
gtaggaatggaaggggaag |
43051224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 43035345 - 43035239
Alignment:
| Q |
21 |
gcacacaatttaatagacggtattctctatgtgaatattacggaaaatgagtcaaaaatgacaacaagaaa-ttaagtagtagaaactgtaggaatggaa |
119 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||| |
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| T |
43035345 |
gcacacaatttaattgacggtattcgctatgtgaatattacggaaaatgagtcaaaaatgacaacaagaaagtcaagtagtggaaactgtaggaacggaa |
43035246 |
T |
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| Q |
120 |
ggggaag |
126 |
Q |
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| T |
43035245 |
agggaag |
43035239 |
T |
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