View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_low_7 (Length: 479)

Name: NF15773_low_7
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_low_7
NF15773_low_7
[»] chr8 (9 HSPs)
chr8 (17-472)||(4097289-4097744)
chr8 (413-472)||(27862322-27862381)
chr8 (101-178)||(3187969-3188046)
chr8 (101-168)||(36004132-36004199)
chr8 (99-179)||(8540405-8540485)
chr8 (102-176)||(4073536-4073611)
chr8 (101-168)||(25021844-25021911)
chr8 (101-185)||(24125021-24125105)
chr8 (101-178)||(38815294-38815371)
[»] chr2 (11 HSPs)
chr2 (32-85)||(31329156-31329209)
chr2 (32-85)||(31335877-31335930)
chr2 (32-84)||(42925626-42925678)
chr2 (32-84)||(28604179-28604231)
chr2 (101-178)||(20142755-20142832)
chr2 (101-178)||(28225000-28225077)
chr2 (101-176)||(33612577-33612652)
chr2 (101-178)||(4413096-4413173)
chr2 (101-178)||(5532420-5532496)
chr2 (32-84)||(7736650-7736703)
chr2 (101-178)||(41867938-41868015)
[»] scaffold0011 (1 HSPs)
scaffold0011 (32-84)||(64845-64897)
[»] chr7 (18 HSPs)
chr7 (32-84)||(26286106-26286158)
chr7 (32-82)||(13313266-13313316)
chr7 (101-178)||(5825273-5825350)
chr7 (101-178)||(27521471-27521548)
chr7 (100-178)||(22197986-22198064)
chr7 (100-178)||(22239757-22239835)
chr7 (101-178)||(28517317-28517394)
chr7 (101-178)||(40726510-40726587)
chr7 (101-197)||(30216088-30216184)
chr7 (32-84)||(30259356-30259408)
chr7 (32-82)||(4582311-4582360)
chr7 (101-178)||(982949-983026)
chr7 (101-178)||(19277293-19277370)
chr7 (99-178)||(9281159-9281238)
chr7 (99-178)||(9292130-9292209)
chr7 (100-178)||(36558897-36558975)
chr7 (101-178)||(4501259-4501335)
chr7 (98-175)||(6634990-6635067)
[»] chr3 (16 HSPs)
chr3 (32-84)||(29351322-29351374)
chr3 (101-175)||(38146059-38146133)
chr3 (32-84)||(3656207-3656259)
chr3 (32-84)||(38891210-38891262)
chr3 (101-178)||(51234616-51234693)
chr3 (38-85)||(2206781-2206828)
chr3 (101-178)||(7900858-7900935)
chr3 (101-178)||(52741542-52741619)
chr3 (101-185)||(43123138-43123222)
chr3 (101-174)||(26772762-26772835)
chr3 (101-178)||(38670910-38670987)
chr3 (101-178)||(53785709-53785786)
chr3 (32-84)||(30079226-30079278)
chr3 (101-196)||(54508414-54508509)
chr3 (42-84)||(20508944-20508986)
chr3 (100-176)||(7502040-7502117)
[»] chr5 (11 HSPs)
chr5 (101-178)||(37873668-37873745)
chr5 (32-84)||(9725723-9725775)
chr5 (32-84)||(35678848-35678900)
chr5 (413-472)||(14365879-14365938)
chr5 (32-81)||(4872976-4873025)
chr5 (101-178)||(430602-430679)
chr5 (101-178)||(13166940-13167017)
chr5 (32-85)||(22832455-22832508)
chr5 (103-178)||(25663064-25663139)
chr5 (98-171)||(7143715-7143786)
chr5 (101-178)||(27336693-27336770)
[»] chr4 (18 HSPs)
chr4 (32-85)||(47245222-47245275)
chr4 (32-82)||(48275791-48275841)
chr4 (32-84)||(8029285-8029337)
chr4 (32-84)||(19103060-19103112)
chr4 (101-178)||(3329996-3330073)
chr4 (32-84)||(8028109-8028160)
chr4 (101-197)||(56462136-56462232)
chr4 (101-178)||(50000955-50001033)
chr4 (101-178)||(53619586-53619663)
chr4 (113-153)||(45386103-45386143)
chr4 (99-178)||(55933490-55933567)
chr4 (32-79)||(19107673-19107720)
chr4 (101-174)||(12918402-12918475)
chr4 (105-178)||(31847087-31847160)
chr4 (101-178)||(50483226-50483303)
chr4 (32-84)||(12875498-12875550)
chr4 (107-171)||(22019026-22019090)
chr4 (130-178)||(54190910-54190958)
[»] chr6 (9 HSPs)
chr6 (32-84)||(12690062-12690114)
chr6 (101-178)||(13398212-13398289)
chr6 (101-178)||(17249335-17249412)
chr6 (101-178)||(33220741-33220818)
chr6 (32-84)||(19674866-19674918)
chr6 (101-178)||(34304496-34304573)
chr6 (32-84)||(12797732-12797784)
chr6 (101-178)||(4165952-4166029)
chr6 (32-84)||(22610603-22610655)
[»] chr1 (13 HSPs)
chr1 (32-84)||(23191789-23191841)
chr1 (32-84)||(16036700-16036752)
chr1 (32-71)||(40167034-40167073)
chr1 (101-179)||(2764478-2764556)
chr1 (32-82)||(16038867-16038917)
chr1 (101-178)||(38731609-38731686)
chr1 (32-84)||(39586032-39586084)
chr1 (107-178)||(47459682-47459753)
chr1 (108-178)||(34644566-34644636)
chr1 (112-197)||(2898683-2898768)
chr1 (101-178)||(20259827-20259904)
chr1 (101-178)||(29169823-29169900)
chr1 (101-168)||(23043886-23043954)
[»] scaffold0054 (1 HSPs)
scaffold0054 (32-84)||(26535-26587)
[»] scaffold0148 (1 HSPs)
scaffold0148 (101-178)||(33250-33327)
[»] scaffold0186 (1 HSPs)
scaffold0186 (102-174)||(10364-10436)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-177)||(103107-103183)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 4097289 - 4097744
Alignment:
Q  17 attattgagcaacattttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaacacgtgtaatcctaattaacaatcaacatgtttt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4097289 attattgagcaatattttaatcttccaaccttccaatttctttctatcttcacatcaatgttccaacacgtgtaatcctaattaacaatcaacatatttt 4097388  T
Q  117 tatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgcaccccaatgttatatttcca 216  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  4097389 tatatgatttacatttgaaatttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgcatcccaatgttatattttca 4097488  T
Q  217 aggtacatataagtaaaatgttatagatttatataattgggaaaccaaaatttcaattttacaaatagagagacaaaaatctcgaattaagatgaccagt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4097489 aggtacatataagtaaaatgttatagatttatataattgggaaaccaaaatttcaattttacaaatagagagacaaaaatctcgaattaagatgaccagt 4097588  T
Q  317 ggtgaacatctgcgattaatccaataaataaattctttattcatattcgcttcttgaaaagtttttcaaaacaaactatagcaagaaagagctgtcaaat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4097589 ggtgaacatctgcgattaatccaataaataaattctttattcatattcgcttgttgaaaagtttttcaaaacaaactatagcaagaaagagctgccaaat 4097688  T
Q  417 acatttcctatattacacacatcacctcccatgatttctggacaagaaggcctttg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4097689 acatttcctatattacacacatcacctcccatgatttctggacaagaaggcctttg 4097744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 413 - 472
Target Start/End: Complemental strand, 27862381 - 27862322
Alignment:
Q  413 aaatacatttcctatattacacacatcacctcccatgatttctggacaagaaggcctttg 472  Q
    |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  27862381 aaatacatttcctacattacacccatcacctcccatgattttcggacaagaaggcctttg 27862322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 3188046 - 3187969
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||||||||| | ||| |||||||||||||||||| || |||||||||    
T  3188046 acaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacata 3187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 36004199 - 36004132
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgac 168  Q
    ||||||||||||||||||||| |||||||||||| | ||||| ||| ||| || ||||||||||||||    
T  36004199 acaatcaacatgtttttataccatttacatttgacatttttgacttcctatcaccagaggttgttgac 36004132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 8540405 - 8540485
Alignment:
Q  99 taacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataa 179  Q
    |||||||| ||||||||||||   || | ||||||| |||||   ||||||| ||||||||||||||||||||||||||||    
T  8540405 taacaatcgacatgtttttatgtcatctgcatttgacactttcaactttctaacatcagaggttgttgactttctacataa 8540485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 4073611 - 4073536
Alignment:
Q  102 caatcaacatgtttttatacgatttacatttgaaacttttgcc-tttctagcatcagaggttgttgactttctaca 176  Q
    ||||||||||| |||||||| |||| ||||||| ||||||||| ||| ||| | |||||||||||||| |||||||    
T  4073611 caatcaacatgattttatacaatttgcatttgacacttttgccatttttagtaccagaggttgttgaccttctaca 4073536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 25021844 - 25021911
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgac 168  Q
    ||||||||||||||||||||| |||| | ||||| | ||||| ||| |||||| ||||||||||||||    
T  25021844 acaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgac 25021911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 24125105 - 24125021
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttca 185  Q
    |||||||||||| |||||||| |||| | ||||| | |||||  || |||||| |||||||||||| | |||||||||| |||||    
T  24125105 acaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataaagttca 24125021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 38815371 - 38815294
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| |||||   ||| |||||| |||||| ||||||| |||||||||    
T  38815371 acaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacata 38815294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 31329156 - 31329209
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaacac 85  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31329156 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaacac 31329209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 31335877 - 31335930
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaacac 85  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31335877 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaacac 31335930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 42925678 - 42925626
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42925678 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaaca 42925626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 28604179 - 28604231
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  28604179 tttaatcttccaaccttccaatttcttttcatcttcacaccaatgttccaaca 28604231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 20142755 - 20142832
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| |||||||  |||||||||||| ||||||||||| || ||||||    
T  20142755 acaatcaacatgcttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacata 20142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 28225077 - 28225000
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| | ||| ||||| ||||||||||||||| |||||||||    
T  28225077 acaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacata 28225000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 33612577 - 33612652
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctaca 176  Q
    |||||||||||| |||||||| ||||  |||||| ||||||| ||| ||| || | |||||||||||| |||||||    
T  33612577 acaatcaacatgattttatacaatttgtatttgacacttttggcttcctaacaccggaggttgttgacattctaca 33612652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 4413096 - 4413173
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| ||||| |||||||| |||||||||    
T  4413096 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacata 4413173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 5532496 - 5532420
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||||| ||||| ||||| | ||| |||||| || ||||||||||  |||||||||    
T  5532496 acaatcaacatgcttttatactatttacttttgacactttag-cttcctagcaccataggttgttgagcttctacata 5532420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 7736703 - 7736650
Alignment:
Q  32 tttaatcttccaaccttccaa-tttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  7736703 tttaatcttccaaccttccaattttttttctaacttcacaccaatgttccaaca 7736650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 41867938 - 41868015
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| |||||| ||||||| |||||||||    
T  41867938 acaatcaacatgcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacata 41868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 64897 - 64845
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  64897 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaaca 64845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 26286158 - 26286106
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26286158 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaaca 26286106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 13313316 - 13313266
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaa 82  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13313316 tttaatcttcaaaccttccagtttctttccatcttcacatcaatgttccaa 13313266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 5825350 - 5825273
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| |||||| ||||| ||||| | | | |||||| |||||||||||||| |||||||||    
T  5825350 acaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacata 5825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 27521548 - 27521471
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||  ||||||| |||||| ||||| |||||||  || ||||||||||||||||||||| |||||||||    
T  27521548 acaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacata 27521471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 22198064 - 22197986
Alignment:
Q  100 aacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||||||||||| |||| | ||||  ||||| |  || ||||||||||||||||||||| |||||||||    
T  22198064 aacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 22239757 - 22239835
Alignment:
Q  100 aacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||||||||||| |||| | ||||  ||||| |  || ||||||||||||||||||||| |||||||||    
T  22239757 aacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22239835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 28517317 - 28517394
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| |||| | ||||| ||||||| ||| ||||||||||||   |||||| |||||||||    
T  28517317 acaatcaacatgtttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttctacata 28517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 40726510 - 40726587
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| ||||   ||||| ||||| | |||  |||||||||||||||||||| |||||||||    
T  40726510 acaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacata 40726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 30216088 - 30216184
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgca 197  Q
    ||||||||||||||||||||| |||| | ||||| ||||| |  || |||||||||||| |||||||  ||| |||||| ||||| ||| |||||||    
T  30216088 acaatcaacatgtttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataaagttcaaatggtcatgca 30216184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 30259356 - 30259408
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||| |||||| ||||||||| |||| |||||||||||||    
T  30259356 tttaatcttccaacctttcaatttatttccatctccacaccaatgttccaaca 30259408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 4582311 - 4582360
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaa 82  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  4582311 tttaatctaccaaccttccaattt-tttccatcttcagatcaatgttccaa 4582360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 983026 - 982949
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  ||||||||| |||||||||||| | |||||||||    
T  983026 acaatcaacatgcttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacata 982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 19277370 - 19277293
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| |||||||||||||| |||||||||    
T  19277370 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 19277293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 9281159 - 9281238
Alignment:
Q  99 taacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||| |||||||| ||||  |||||| | ||||  ||| |||||| |||| ||||||||| |||||||||    
T  9281159 taacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacata 9281238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 9292130 - 9292209
Alignment:
Q  99 taacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||| |||||||| ||||  |||||| | ||||  ||| |||||| |||| ||||||||| |||||||||    
T  9292130 taacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacata 9292209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 36558897 - 36558975
Alignment:
Q  100 aacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||||||||||  |||| ||||||| | |||||  ||||||||| || | || ||||||||||| ||||    
T  36558897 aacaatcaacatgtttttatataatttgcatttgacatttttggttttctagcaccaaaagtcgttgactttctccata 36558975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 4501335 - 4501259
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||  |||| | ||||| ||||| |  ||||||||| |||||||||||||| |||||||||    
T  4501335 acaatcaacatgcttttatataatttgcttttgacactttggt-tttctagcaccagaggttgttgaccttctacata 4501259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 6634990 - 6635067
Alignment:
Q  98 ttaacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctac 175  Q
    |||||||||||||| ||||||||  |||| | ||||| | ||| |  ||| |||||||||||||||||||| ||||||    
T  6634990 ttaacaatcaacatatttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctac 6635067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 29351322 - 29351374
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29351322 tttaatcttccaaccttccaatttctttccatcttcacaccaatgttccaaca 29351374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 38146133 - 38146059
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctac 175  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||| || ||||||    
T  38146133 acaatcaacatgtttttataccatttacatttgacacttttgacttcctagcaccagaggttgtttacattctac 38146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 3656259 - 3656207
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  3656259 tttaatcttccaaccttccattttctttccatcttcacaccaatgttccaaca 3656207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 38891210 - 38891262
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  38891210 tttaatcttccaaccttccaatttctttccaccttcacaccaatgttccaaca 38891262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 51234693 - 51234616
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||| ||||||| |||||||| |||||  ||||| ||||| | ||||||||||||||||||||||||| |||||||||    
T  51234693 acaaccaacatgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacata 51234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 2206828 - 2206781
Alignment:
Q  38 cttccaaccttccaatttctttccatcttcacatcaatgttccaacac 85  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  2206828 cttccaaccttccaatttctttccattttcacaccaatgttccaacac 2206781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 7900935 - 7900858
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| ||||   ||||| ||||| | ||| ||||||||||||||||||||| |||||||||    
T  7900935 acaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 7900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 52741542 - 52741619
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| |||||||  || |||||| |||||||||||||| |||||||||    
T  52741542 acaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacata 52741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 43123222 - 43123138
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttca 185  Q
    |||||||||||||| |||||| ||||||  |||| |||||||  ||||||||| || || |||||||||||||||| || |||||    
T  43123222 acaatcaacatgttgttatactatttacgattgacacttttgattttctagcaccatagtttgttgactttctacaaaaagttca 43123138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 26772835 - 26772762
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttcta 174  Q
    |||||||||||| |||||||| |||| | ||||| ||||||| ||| |||||||||||||  |||||| |||||    
T  26772835 acaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttcta 26772762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 38670910 - 38670987
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| ||||   ||||| ||||||| |||||||||||||||||  | |||| |||||||||    
T  38670910 acaatcaacatgcttttatacaatttgtttttgacacttttggctttctagcatcagaggcggatgaccttctacata 38670987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 53785786 - 53785709
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| |||||||||||||| |||||||||    
T  53785786 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 53785709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 30079226 - 30079278
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||    
T  30079226 tttaatcttccaacctttcaattttcttccaacttcacatcaatgtttcaaca 30079278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 54508414 - 54508509
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgc 196  Q
    ||||| ||||||||||||||  |||| | ||||| | |||||  ||||||||| |||||||||||||| |||| ||||| || || | ||||||||    
T  54508414 acaattaacatgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctgcataaggtacaaaggatcatgc 54508509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 20508944 - 20508986
Alignment:
Q  42 caaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  20508944 caaccttccaatttcattcaaacttcacatcaatgttccaaca 20508986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 7502040 - 7502117
Alignment:
Q  100 aacaatcaacatgttttt-atacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctaca 176  Q
    |||||||||||||||||| |||| |||| | ||||| | |||||  || |||||| |||||||||||||| |||||||    
T  7502040 aacaatcaacatgttttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 37873668 - 37873745
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| |||| | ||||| ||||||| ||| |||||| |||||||||||||| |||||||||    
T  37873668 acaatcaacatgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttctacata 37873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9725775 - 9725723
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9725775 tttaatcttccaaccttccaatttctttccatcttgacaccaatgttccaaca 9725723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 35678900 - 35678848
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  35678900 tttaatcttccaaccttccaatttctttccatctgcacaccaatgttccaaca 35678848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 14365879 - 14365938
Alignment:
Q  413 aaatacatttcctatattacacacatcacctcccatgatttctggacaagaaggcctttg 472  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  14365879 aaatacatttcctatattacacccatcaactcgcatgatttccggacaagaaggcctttg 14365938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 4872976 - 4873025
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttcca 81  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  4872976 tttaatcttccaacctttcaatttctttccatcttcacaccaaagttcca 4873025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 430679 - 430602
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||||| |||  ||||||||||||  |||||| |||||||||    
T  430679 acaatcaacatgcttttataccatttgcttttgacacttttgtcttcatagcatcagaggcagttgaccttctacata 430602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 13166940 - 13167017
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| | ||| ||||||||||||  ||||||| |||||||||    
T  13166940 acaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacata 13167017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 22832508 - 22832455
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaacac 85  Q
    ||||||||||||||||| ||||||| || || ||||||| ||||||||||||||    
T  22832508 tttaatcttccaaccttacaatttcctttcaacttcacaccaatgttccaacac 22832455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 25663064 - 25663139
Alignment:
Q  103 aatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||| |||| | ||||| |||||   ||| ||||||||||| ||||||||  |||||||||    
T  25663064 aatcaacatgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacata 25663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 7143786 - 7143715
Alignment:
Q  98 ttaacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgacttt 171  Q
    ||||||||||||||||||||||| |||||   | ||| ||||||| ||| ||| ||||||| ||||||||||||    
T  7143786 ttaacaatcaacatgtttttatatgattt--gtgtgatacttttggcttactaacatcagatgttgttgacttt 7143715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 27336770 - 27336693
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||  |||||||| |||| | ||||| |||| || ||| |||||||||||||  |||||| |||||||||    
T  27336770 acaatcaacatacttttataccatttgcttttgacacttgtggcttcctagcatcagaggcagttgaccttctacata 27336693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 47245222 - 47245275
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaacac 85  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  47245222 tttaatctttcaaccttccaatttctttccatcttcacaccaatgttccaacac 47245275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 48275841 - 48275791
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaa 82  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  48275841 tttaatcttccaaccttccaatttctttccgtcttcacaccaatgttccaa 48275791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 8029337 - 8029285
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  8029337 tttaatcttctaaccttctaatttctttccatcttcacaccaatgttccaaca 8029285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 19103060 - 19103112
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  19103060 tttaatcttccaaccgtccaatttctttccatcttcacaccaatgtttcaaca 19103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 3330073 - 3329996
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||||| ||| |||||||||||||  |||||| |||||||||    
T  3330073 acaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacata 3329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 8028160 - 8028109
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  8028160 tttaatcttccaaccttcca-tttcttttcatcttcacatcaatgtttcaaca 8028109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 56462136 - 56462232
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgca 197  Q
    ||||||||||||||||||||| ||||   || || |||||||  || |||||| |||||||||||||| |||||||||  ||||| | |||||||||    
T  56462136 acaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacatagagttcaaaggatcatgca 56462232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 50000955 - 50001033
Alignment:
Q  101 acaatcaacatgttttta-tacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| ||||| ||| |||| | ||||| ||||||| |||||||||||||||||  |||||| |||||||||    
T  50000955 acaatcaacatgcttttaatacaatttgcttttgacacttttggctttctagcatcagaggcagttgaccttctacata 50001033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 53619663 - 53619586
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| ||||   ||||| ||||||| ||| |||||||||||||  |||||| |||||||||    
T  53619663 acaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagaggcagttgaccttctacata 53619586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 45386103 - 45386143
Alignment:
Q  113 tttttatacgatttacatttgaaacttttgcctttctagca 153  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  45386103 tttttataccatttacatttgaaacttttggctttctagca 45386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 55933490 - 55933567
Alignment:
Q  99 taacaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||||| |||||||| |||| | ||||| ||||| | ||| ||||||||  ||||||||||| |||||||||    
T  55933490 taacaatcaacatgcttttataccatttgcttttgacactttcgacttcctagcatc--aggttgttgaccttctacata 55933567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 19107673 - 19107720
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttc 79  Q
    |||||||||||||||||||||||| |||||| | ||||| ||||||||    
T  19107673 tttaatcttccaaccttccaatttatttccagcatcacaccaatgttc 19107720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 12918402 - 12918475
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttcta 174  Q
    ||||||||||   |||||||| |||||| ||||| ||||| | ||| |||||||||||| |||||||| |||||    
T  12918402 acaatcaacacacttttatactatttacttttgacactttcgacttcctagcatcagagattgttgaccttcta 12918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 31847160 - 31847087
Alignment:
Q  105 tcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||| ||| |||| | ||||| ||||||| ||| ||||||||||| |  |||||| |||||||||    
T  31847160 tcaacatgtttttttaccatttgcttttgacacttttggcttcctagcatcagaagcggttgaccttctacata 31847087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 50483226 - 50483303
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | || || ||||| |  || |||||| |||||||||||||| |||||||||    
T  50483226 acaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacata 50483303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 12875498 - 12875550
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||| ||| |||||||||| ||||| | ||||| |||||||||||||    
T  12875498 tttaatcttctaactttccaatttccttccaacatcacaccaatgttccaaca 12875550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 22019090 - 22019026
Alignment:
Q  107 aacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgacttt 171  Q
    ||||||||||||||| |||| ||||||| | ||||| ||||| ||||  |||||||| |||||||    
T  22019090 aacatgtttttatacaatttgcatttgacatttttgactttcgagcaaaagaggttgctgacttt 22019026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 54190910 - 54190958
Alignment:
Q  130 tttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  54190910 tttgacacttttgactttctagtatcagaggttgttgaccttccacata 54190958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 12690062 - 12690114
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  12690062 tttaattttccaaccttccaatttctttccatcttcacaccaatgttccaaca 12690114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 13398212 - 13398289
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||| ||||||||| |||||| ||||| | ||||| ||| ||| ||||||| ||||||||| |||||||||    
T  13398212 acaatcaacatatttttatactatttacttttgatatttttgacttcctaacatcagaagttgttgacattctacata 13398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 17249335 - 17249412
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||||| ||| |||||||||||||  |||||| |||||||||    
T  17249335 acaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacata 17249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 33220741 - 33220818
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| | ||| |||||||| |||||||||||| |||||||||    
T  33220741 acaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttctacata 33220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 19674866 - 19674918
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||| |||||||||||||| |||||||||||||| || ||||||||||    
T  19674866 tttaatctttcaaccttccaatttatttccatcttcacaccattgttccaaca 19674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 34304573 - 34304496
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| | ||| ||||||||||| | ||||||| |||||||||    
T  34304573 acaatcaacatgcttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttctacata 34304496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 12797784 - 12797732
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||| ||||||| ||||| ||||||| |||| ||||||||    
T  12797784 tttaatcttccaacctttcaatttccttccaacttcacaccaatattccaaca 12797732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 4165952 - 4166029
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||  |||| | ||||| ||||| |  || |||||| |||||||||||||| |||||||||    
T  4165952 acaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacata 4166029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 22610603 - 22610655
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||| |||||||||||||| |||   ||||||| |||||||||||||    
T  22610603 tttaatcttctaaccttccaatttccttctgacttcacaccaatgttccaaca 22610655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 23191841 - 23191789
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  23191841 tttaatcttccaacgttccaatttctttccatcttcacaccaatgttccaaca 23191789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 16036700 - 16036752
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  16036700 tttaatcttccaaccttgtaatttctttccatcttcacaccaatgttccaaca 16036752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 40167034 - 40167073
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacat 71  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40167034 tttaatcttccaaccttccaatttcttttcatcttcacat 40167073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 2764556 - 2764478
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataa 179  Q
    |||||||||||| |||||| | |||| | ||||| |||||   ||| ||||||||||||||||||||| ||||||||||    
T  2764556 acaatcaacatgcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttctacataa 2764478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 16038867 - 16038917
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaa 82  Q
    |||||||||| |||||| ||||||||||||||||||||  |||||||||||    
T  16038867 tttaatcttcaaacctttcaatttctttccatcttcacgccaatgttccaa 16038917  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 38731686 - 38731609
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||  |||||||| |||| | ||||||||||||| |||  ||||| ||||||||||| || |||||||||    
T  38731686 acaatcaacatacttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgttaaccttctacata 38731609  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 39586084 - 39586032
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||| |||| || ||||||| ||||||||||||| |||||||||||||    
T  39586084 tttaatctttcaacatttcaatttccttccatcttcacaccaatgttccaaca 39586032  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 47459753 - 47459682
Alignment:
Q  107 aacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||| |||| | ||||| ||||||| ||| |||| ||||||||  |||||| |||||||||    
T  47459753 aacatgtttttataccatttgcttttgatacttttggcttcctagtatcagaggcagttgaccttctacata 47459682  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 34644636 - 34644566
Alignment:
Q  108 acatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||| |||||||| ||||   ||||| ||||| | ||| ||||||||||||||||||||| |||||||||    
T  34644636 acatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 34644566  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 2898768 - 2898683
Alignment:
Q  112 gtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacataacgttcatatgatcatgca 197  Q
    |||||||||| |||| | ||||| ||||| |  || |||||| |||||||||||||| |||||||||  ||||| | |||||||||    
T  2898768 gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaagatcatgca 2898683  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 20259827 - 20259904
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| |||||   |||| ||||| |  ||  ||||| |||||||||||||| |||||||||    
T  20259827 acaatcaacatgtttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttctacata 20259904  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 29169823 - 29169900
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| ||||||||||| || |||||||||    
T  29169823 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctacata 29169900  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 23043954 - 23043886
Alignment:
Q  101 acaatcaacatgtttttatacgatttac-atttgaaacttttgcctttctagcatcagaggttgttgac 168  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||||  || |||  ||||||||||||    
T  23043954 acaatcaacatgcttttataccatttacaatttgatacttttgccttcgtaacataggaggttgttgac 23043886  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 26535 - 26587
Alignment:
Q  32 tttaatcttccaaccttccaatttctttccatcttcacatcaatgttccaaca 84  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  26535 tttaatcttccaaccttccaatttctttcaattttcacaccaatgttccaaca 26587  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 33327 - 33250
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacata 178  Q
    ||||||||||||||||||||| |||||| ||||| | ||| |  || ||| || |||||||||||||| |||||||||    
T  33327 acaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacata 33250  T

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Target: scaffold0186 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 10436 - 10364
Alignment:
Q  102 caatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttcta 174  Q
    ||||||||||| |||||||| |||| | ||||| |||| || ||| |||||| |||||||||||||| |||||    
T  10436 caatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttcta 10364  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 103183 - 103107
Alignment:
Q  101 acaatcaacatgtttttatacgatttacatttgaaacttttgcctttctagcatcagaggttgttgactttctacat 177  Q
    |||||||||||| |||||||| |||| | ||||| ||||| |  || |||||| |||||| ||||||| ||||||||    
T  103183 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacat 103107  T

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