View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15774_high_1 (Length: 383)
Name: NF15774_high_1
Description: NF15774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15774_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 33713315 - 33713184
Alignment:
| Q |
206 |
atatgactatgtaaattgcagacctacatttgttttaaccaatcaaggccacacactgccaccaaaatgtcttaatctcatctttgttttgcctttcaag |
305 |
Q |
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| T |
33713315 |
atatgactatgtaaattgcagacctacatttgttttaaccaatcaaggccacacactgccatcaaaatgtcttaatctcatctttgttttgcctttcaag |
33713216 |
T |
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| Q |
306 |
tttgaaggaatcactcaaaagtccaatgcata |
337 |
Q |
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| T |
33713215 |
tttgaaggaatcactcaaaagtccaatgcata |
33713184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 33713478 - 33713397
Alignment:
| Q |
43 |
tcacgttggtcagcacgaagagtgaatcataacagtttataactccattcg---agtatatccatgttcacagggcatggaa |
121 |
Q |
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| T |
33713478 |
tcacattggtcagcacgaagagtgaatcataacagtttataactccattcgagtagtatatccatgttcacagggcatggaa |
33713397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33713542 - 33713498
Alignment:
| Q |
1 |
atacgcataatatatttgttaatacggtgcgatgaaattcattca |
45 |
Q |
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| T |
33713542 |
atacgcataatatatttgttaatacggtgcgatgaaattcattca |
33713498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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