View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15774_high_3 (Length: 245)

Name: NF15774_high_3
Description: NF15774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15774_high_3
NF15774_high_3
[»] chr6 (6 HSPs)
chr6 (23-225)||(11378678-11378881)
chr6 (144-199)||(16260662-16260717)
chr6 (141-199)||(8051014-8051072)
chr6 (141-199)||(26296245-26296303)
chr6 (143-184)||(862883-862924)
chr6 (147-199)||(31159123-31159175)
[»] chr5 (1 HSPs)
chr5 (141-199)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (144-202)||(49166651-49166709)
chr1 (144-199)||(8900833-8900888)
chr1 (144-199)||(32804291-32804346)
chr1 (145-199)||(5347008-5347062)
chr1 (143-175)||(39969805-39969837)
[»] chr8 (1 HSPs)
chr8 (143-199)||(24185570-24185626)
[»] chr7 (2 HSPs)
chr7 (144-199)||(2399739-2399794)
chr7 (143-199)||(21955381-21955436)
[»] chr2 (3 HSPs)
chr2 (140-199)||(12801085-12801144)
chr2 (143-199)||(11565039-11565095)
chr2 (147-199)||(33956332-33956384)
[»] chr4 (1 HSPs)
chr4 (144-202)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 11378678 - 11378881
Alignment:
Q  23 atcatagatactgtgatgtgaacatgtcaatgaaaaacatactccctttggtcatgtatctaacttataaatgtatctaatttgtaaatgtgagagggta 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  11378678 atcataggtactgtgatgtgaacatgtcaatgaaaaacatactccctttggtcatttatctaacttataaatgtatctaatttgtaaatgtgacagggta 11378777  T
Q  123 gattaattattcaatgtaaaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgta-cccatcatcag 221  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11378778 cattaattattcaatgtaagatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgtaccccatcatcag 11378877  T
Q  222 attt 225  Q
    ||||    
T  11378878 attt 11378881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 16260662 - 16260717
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    |||||||||||||| |||| |||||  ||||||||||||||| |||||||||||||    
T  16260662 tacattgaataattaatgtctctaacctataaatgtgactgaatacattaattatt 16260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 8051014 - 8051072
Alignment:
Q  141 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||| ||||||||||| |||||| |||| ||||||||||| | | |||||||||||||    
T  8051014 aaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattatt 8051072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 26296245 - 26296303
Alignment:
Q  141 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||  ||| |||||||||    
T  26296245 aaatacattaaataattaatgtatttaatctataaatgtgactgtatacgttaattatt 26296303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 862924 - 862883
Alignment:
Q  143 atacattgaataattcatgtatctaatttataaatgtgactg 184  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  862924 atacattgaataattaatgtatctaacctataaatgtgactg 862883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 31159175 - 31159123
Alignment:
Q  147 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||| | ||||||||||  |||||||||||| || |||||||||||||    
T  31159175 attgaataactaatgtatctaacatataaatgtgaccgaatacattaattatt 31159123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 32522632 - 32522574
Alignment:
Q  141 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||||||||| |||||||| || ||||||||||||||  |||||||||||||    
T  32522632 aaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattatt 32522574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 49166709 - 49166651
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 202  Q
    |||||||||||||| ||||||||||  ||||||||||||||  ||||||||||||||||    
T  49166709 tacattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaa 49166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 8900833 - 8900888
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    |||||||||||||| ||||||||||  |||||||||||| |  |||||||||||||    
T  8900833 tacattgaataattaatgtatctaacctataaatgtgaccggatacattaattatt 8900888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 32804346 - 32804291
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    |||||||||| ||| |||||||||   ||||||||||||||| |||||||||||||    
T  32804346 tacattgaatcattaatgtatctatcatataaatgtgactgaatacattaattatt 32804291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 5347062 - 5347008
Alignment:
Q  145 acattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||||| || |||||||| ||||||||||| ||  |||||||||||||    
T  5347062 acattgaataattaatatatctaatatataaatgtgaatggatacattaattatt 5347008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 39969805 - 39969837
Alignment:
Q  143 atacattgaataattcatgtatctaatttataa 175  Q
    ||||||||||||||| |||||||||||||||||    
T  39969805 atacattgaataattgatgtatctaatttataa 39969837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 24185570 - 24185626
Alignment:
Q  143 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||||||| || |||||||  ||||||||||||||  |||||||||||||    
T  24185570 atacattgaataattaatatatctaacctataaatgtgactggatacattaattatt 24185626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 2399739 - 2399794
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||| || |||||||||| ||||||||||||| |  |||||||||||||    
T  2399739 tacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattatt 2399794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 21955436 - 21955381
Alignment:
Q  143 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||||||| |||||||| |  ||||||||||||||  |||||||||||||    
T  21955436 atacattgaataatt-atgtatctgacatataaatgtgactggatacattaattatt 21955381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 12801085 - 12801144
Alignment:
Q  140 aaaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||| | || ||||||||||    
T  12801085 aaaattcattgaataattaatgtatttaatctataaatgtgactaaatatattaattatt 12801144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 11565039 - 11565095
Alignment:
Q  143 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||||||| ||||| || || ||||||||||||||  |||||||| ||||    
T  11565039 atacattgaataattaatgtacctgatctataaatgtgactggatacattaaatatt 11565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 33956384 - 33956332
Alignment:
Q  147 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 199  Q
    ||||||||||| |||||||||| |||||||| |||| |  |||||||||||||    
T  33956384 attgaataattaatgtatctaacttataaatatgaccggatacattaattatt 33956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 52840307 - 52840364
Alignment:
Q  144 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 202  Q
    |||||| ||||||| ||||||||||  |||||||||||| || ||||||||||||||||    
T  52840307 tacattaaataattaatgtatctaacatataaatgtgaccga-tacattaattatttaa 52840364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University