View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15774_high_4 (Length: 239)
Name: NF15774_high_4
Description: NF15774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15774_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 10843252 - 10843052
Alignment:
| Q |
12 |
agagagctggttagtgtaattgaggtctataaataagtccatttatgtactcatcactcatctttttcactatagacttaaacgggcagttctttctttg |
111 |
Q |
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| T |
10843252 |
agagagctggttggtgtaattgaggtctataaataagtccattcatgtactcatcactcatctttttcactatagacttaaacgggcagttttttctata |
10843153 |
T |
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| Q |
112 |
gacctagaggttgaagtagtggttctggtatgtttttcactatagactaagggtgtgtattttgcatacagtggtggcgatgatgcatatgaagggtaga |
211 |
Q |
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| T |
10843152 |
gacctagaggttgaagtattggttctggtatatttttcactatagactaagggtgtgtattttgcatacagtggtgatgatgatgcatatgaaggataga |
10843053 |
T |
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| Q |
212 |
a |
212 |
Q |
| |
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| T |
10843052 |
a |
10843052 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 3458826 - 3458882
Alignment:
| Q |
21 |
gttagtgtaattgaggtctataaataagtccatttatgtactcatcactcatctttt |
77 |
Q |
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|||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| |
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| T |
3458826 |
gttagtgtgattgaggtctataaataagaccatacatgtactcattactcatctttt |
3458882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 3961265 - 3961221
Alignment:
| Q |
21 |
gttagtgtaattgaggtctataaataagtccatttatgtactcat |
65 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
3961265 |
gttagtataattgaggtctataaataagaccatatatgtactcat |
3961221 |
T |
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