View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15775_high_1 (Length: 808)

Name: NF15775_high_1
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15775_high_1
NF15775_high_1
[»] chr4 (2 HSPs)
chr4 (18-736)||(25813330-25814056)
chr4 (734-795)||(25813211-25813272)


Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Complemental strand, 25814056 - 25813330
Alignment:
Q  18 ctttgagtataccaaattatttggccacgatcttcttagtacccagtatccatcagaatttatagcctcacgaatcatatgtctgcatttgtagagtttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25814056 ctttgagtataccaaattatttggccacgatcttcttagtactcagtatccatcagaattaatagcctcacgaatcatatgtctgcatttgtagagtttc 25813957  T
Q  118 ttttgaaaccacaactcagttaatgatgttcttcccttgccatgattctcaacattaccagaaaagatgtttagtatcgctagcgtatactttgctccat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25813956 ttttgaaaccacaactcagttaatgatgttcttcccttgccatgattctcaacattaccagaaaagatgtttagtatcgctagcgtatactttgctccat 25813857  T
Q  218 cgtgaccttgttgtaaggccatttctagaaaatttctagcagaatcatagtttgaaatttgatagcaaatatctaggatacccattcgaaagcaatactc 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25813856 cgtgaccttgttgtaaggccatttctagaaaatttctagtagaatcatagtttgaaatttgatagcaaatatctaggatacccattctaaagcaatactc 25813757  T
Q  318 tggatttctactagattctaacaattggtaaaaagaatccctatttccatcgactttgtacatgtttctggttagtgatatatccaatgcacaacaatgt 417  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25813756 tggatttctactagattctaacaattggtaaagagaatccctatttccatcgactttgtacatgtttctggttagtgatgtatccaatgcacaacaatgt 25813657  T
Q  418 gcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctcaaattgagaagatctttcagtgaagatgtagcaactaacgtaattataa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25813656 gcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctcaaattgagaagatctttcagtgaagatgtagcaaccaacgtaattataa 25813557  T
Q  518 agattaaaacatcatcagagagttctggaagcatattgttttggtggtttatttcaactacaaaaatatatttgattgaagtttgcttctgcagggttat 617  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  25813556 agattaaaacatcgtcagagagttctggaagcatattgttttggtggtttatttcacctac-aaaatatatttgagtgaagtttgcttctgcagggttat 25813458  T
Q  618 cttttttatgtgtgaaagttgttatatgatggatacattttatagttttat---------aattaaggacttgattgttgattatcaatcaatacgtttg 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||    
T  25813457 cttttttatgtgtgaaagttgttatatgatggatacattttatagttttataagtcagagaattaacgacttgattgttgattatcaatcaatacgtttg 25813358  T
Q  709 gtatgaaaagttgtgtcaattgatattg 736  Q
    ||||||||| |||||||| |||||||||    
T  25813357 gtatgaaaaattgtgtcagttgatattg 25813330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 25813272 - 25813211
Alignment:
Q  734 ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc 795  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25813272 ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc 25813211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University