View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15775_high_3 (Length: 491)
Name: NF15775_high_3
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 26836487 - 26836211
Alignment:
| Q |
15 |
aacgtcgaaattgttaagttgaatgctatgatttttctttgaaccttgacagtgccacttgtgtgtgtgagttttcaatgaccattatcatttcgtctat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26836487 |
aacgtcgaaattgttaagttgaatgctatgatttttctttgaaccttgacagttccacttatgtgtgtgaattttctatgaccattatcatttcgtctat |
26836388 |
T |
|
| Q |
115 |
ctnnnnnnncaatgtattagtttgcatctcccatcatctctttcatggttgtgttgatactaatgatgaacgccttgagtcctttcatttattgtttccc |
214 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836387 |
ctaaaaaaacaatgtattagtttgcatctctcatcatctttttcatggttgtgttgataccaatgatgaacgccttgagtcctttcatttattgtttccc |
26836288 |
T |
|
| Q |
215 |
gtcatggtaattggtaaatgatgaaagcaccaatgtgaagataagaaattaaacaaaagcaaatgtggaaatctcaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26836287 |
gtcatggtaattggtaaatgatgaaagcaccaatgtaaagataagaaattatacaaaagcaaatgtggaaatctcaa |
26836211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 26836134 - 26836043
Alignment:
| Q |
383 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatag |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836134 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatag |
26836043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 13943600 - 13943562
Alignment:
| Q |
78 |
tgtgtgagttttcaatgaccattatcatttcgtctatct |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13943600 |
tgtgtgagttttcaatgactattatcatttcgtttatct |
13943562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 37457289 - 37457326
Alignment:
| Q |
70 |
cacttgtgtgtgtgagttttcaatgaccattatcattt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37457289 |
cacttgtgtgtgtgagttttcaatgactattgtcattt |
37457326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 600333 - 600288
Alignment:
| Q |
71 |
acttgtgtgtgtgagttttcaatgaccattatcatttcgtctatct |
116 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||||||||||||||||| |
|
|
| T |
600333 |
acttgtgtgtatgaattttcaataactattatcatttcgtctatct |
600288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University