View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15775_low_13 (Length: 250)
Name: NF15775_low_13
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 54692809 - 54693000
Alignment:
| Q |
1 |
attatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgtt |
100 |
Q |
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| T |
54692809 |
attatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgtt |
54692908 |
T |
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| Q |
101 |
ataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcc |
192 |
Q |
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| T |
54692909 |
ataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcc |
54693000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 54700175 - 54700388
Alignment:
| Q |
9 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
108 |
Q |
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| T |
54700175 |
aaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtttgtagataagatgttgctatgtt |
54700269 |
T |
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| Q |
109 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcctctgctgtgagctcca |
208 |
Q |
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| T |
54700270 |
tggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacc----tttcttgatgtcatgaatttcttagcctctgcagtgagctcca |
54700365 |
T |
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| Q |
209 |
atccacctccccttcttcttatg |
231 |
Q |
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| T |
54700366 |
atccatctccccttcttcttatg |
54700388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 54688230 - 54688379
Alignment:
| Q |
9 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
108 |
Q |
| |
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|||||||||||| || |||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||| || || |
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| T |
54688230 |
aaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttt |
54688324 |
T |
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| Q |
109 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
163 |
Q |
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||| | | ||||||||||| ||||| |||||| || | |||| |||||||||| |
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| T |
54688325 |
tggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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