View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15775_low_14 (Length: 243)
Name: NF15775_low_14
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 10691532 - 10691311
Alignment:
| Q |
9 |
gagatgaagtcaaagtttattagaagttaaaaagtttagcaattgaagttctagattctaaagttttaattccaaatcaa-------tcatatttattaa |
101 |
Q |
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| T |
10691532 |
gagatgaagtcaaagtttattagaagttaaaaagtttagcaaatgaagttctagattctaaagttttaattccaaatcaaggcattttcatatatattga |
10691433 |
T |
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| Q |
102 |
aagatatgttgtgaatgttataaaaaaggtttattcacaagattgttggaagtatctatctagcatatgatgtatttatggaactttttgaattttagat |
201 |
Q |
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| T |
10691432 |
aagatatgttgtgaatgttataaaaa-ggtttattcacaagattgttggaagtatcta----gcatatgatgtatttatggaactttttgaattttagat |
10691338 |
T |
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| Q |
202 |
taaatcatccatgatgacggaatcaat |
228 |
Q |
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| T |
10691337 |
taaatcatccatgatgacggaatcaat |
10691311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10687557 - 10687762
Alignment:
| Q |
17 |
gtcaaagtttattagaagttaaaaagtttagcaattgaagttctagattctaaagttttaattccaaatcaa-------tcatatttattaaaagatatg |
109 |
Q |
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| T |
10687557 |
gtcaaagtttattgggagacaaaaagattagcaaatgaagttgaagatccaaaagttgtaactccaaatcaaggagttgtcaaactttttaatatatatg |
10687656 |
T |
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| Q |
110 |
ttgtgaatgttataaaaaaggtttattcacaagattgttg-gaagtatctatctagcatatgatgtatttatggaactttttgaattttagattaaatca |
208 |
Q |
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| T |
10687657 |
tcgtgaatgttataaaaa-ggttgattgacatgattgttgcgaagg---tatcttgcaaatgatatttttatgaaactttttaaattttagattgaataa |
10687752 |
T |
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| Q |
209 |
tccatgatga |
218 |
Q |
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| T |
10687753 |
tccatgatga |
10687762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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