View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15775_low_4 (Length: 472)
Name: NF15775_low_4
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 40110383 - 40109939
Alignment:
| Q |
18 |
ctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaatggagaattctgg |
117 |
Q |
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| T |
40110383 |
ctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaatggagaattctgg |
40110284 |
T |
|
| Q |
118 |
gctctatttgcactccatcaggtcatcaaattatatcttcactcctgacattgttttatgtttctttgaatgaaaattgtttattttagaagtcaaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40110283 |
gctctatttgcactccatcaggtcatcaaattatatcttcactcctgacattgttttatgtttctttgaatgaaaattgtttattttagaagtcaaaaaa |
40110184 |
T |
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| Q |
218 |
ttgattttcttttctttctgatacatgctttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatcttc |
317 |
Q |
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| T |
40110183 |
atgattttcttttctttctgatacatgctttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatcttc |
40110084 |
T |
|
| Q |
318 |
acattttgcaaatattcttataatcatctatttgcttaatccaatcttgttagaaattaagaattgttggtgtttatcatacaggtgggaagtatcaaag |
417 |
Q |
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| T |
40110083 |
acattttgcaaatattcttataatcatctatttgcttaatccaatcttgttagaaattaagaattgttggtgtttatcatacaggtgggaagtatcaaag |
40109984 |
T |
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| Q |
418 |
gcacaaccttattgtttgttgtattcctttctgttatgacctttg |
462 |
Q |
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| T |
40109983 |
gcacaaccttattgtttgttgtattcctttctgttatgacctttg |
40109939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 40148591 - 40148472
Alignment:
| Q |
21 |
tcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaatggagaattctgggct |
120 |
Q |
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| T |
40148591 |
tcagggaacatatctaacttccactgcacacagtcatgctatagataacaatctccacgaaggtgctgtaattggtgacttcaacggggaattctgggct |
40148492 |
T |
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| Q |
121 |
ctatttgcactccatcaggt |
140 |
Q |
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| T |
40148491 |
gtttatgcactccatcaggt |
40148472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 40155133 - 40155007
Alignment:
| Q |
18 |
ctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaatggagaattctgg |
117 |
Q |
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|||||||||||||||| |||||||||| || |||||| ||||| ||||||||| |||||||||| || ||||||| |||||||| ||||| |||||| |
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| T |
40155133 |
ctgtcagggaacatatctaacttccactgcacgcagtcatgctatagataacaatttccacgaaggtgcggtaattggtgacttcaacggagagttctgg |
40155034 |
T |
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| Q |
118 |
gctctatttgcactccatcaggtcatc |
144 |
Q |
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| | ||| |||| |||||||||||| |
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| T |
40155033 |
ggtgtatacacacttcatcaggtcatc |
40155007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 40148345 - 40148266
Alignment:
| Q |
246 |
tttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatcttcacattttg |
325 |
Q |
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| T |
40148345 |
tttgcagtttattggaaatcttattacatttgctctactcagtgatgggcaggtatgtggtggttggtcttcatattttg |
40148266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 40154345 - 40154287
Alignment:
| Q |
404 |
gggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttg |
462 |
Q |
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| T |
40154345 |
gggaagtaccaatggcacaactttattgtttgtcgtattcctttccgttatgacctttg |
40154287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 462
Target Start/End: Complemental strand, 40147708 - 40147645
Alignment:
| Q |
399 |
caggtgggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttg |
462 |
Q |
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|||| |||||||| ||| ||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
40147708 |
caggggggaagtaccaacggcaccactttattgtttgttgtattccttttcgttatgacctttg |
40147645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 40154906 - 40154837
Alignment:
| Q |
247 |
ttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatctt |
316 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||| |
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| T |
40154906 |
ttgcagtttattggaaatcttattacatttgctcttctcagtgatgggcaggtatgtggtggttagtctt |
40154837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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