View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15775_low_5 (Length: 459)
Name: NF15775_low_5
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_5 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 6 - 459
Target Start/End: Complemental strand, 49191217 - 49190764
Alignment:
| Q |
6 |
aaaaatcttaactgattctgccgaaattaatagttaatacctattagacctaataaataaattatatatatgaacgattgtgcatatcgattaacttggc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191217 |
aaaaatcttaactgattctgccgaaattaatagttaatacctattagacctagtaaataaattatatatatgaacgattgtgcatatcgattaacttggc |
49191118 |
T |
|
| Q |
106 |
cttttcaattagttgactataatgtaactataccggatcacttttttggtgattgaaattctggatggaataggtacaagaagcaaactgggagctgtac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49191117 |
cttttcaattagttgactataatgtaactatactggatcacttttttggtgattgaaattctggatggtataggtacaagaagcaaactgggagctgtac |
49191018 |
T |
|
| Q |
206 |
aagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191017 |
aagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaag |
49190918 |
T |
|
| Q |
306 |
ccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcact |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49190917 |
cagctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcact |
49190818 |
T |
|
| Q |
406 |
tggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgtt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49190817 |
tggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgtt |
49190764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 142 - 459
Target Start/End: Complemental strand, 49202370 - 49202053
Alignment:
| Q |
142 |
atcacttttttggtgattgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgag |
241 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
49202370 |
atcactttttcggtgattcaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgag |
49202271 |
T |
|
| Q |
242 |
aagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggagg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||| ||||| || |||||||||||||| ||||||||||| |||| |
|
|
| T |
49202270 |
aagaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagagg |
49202171 |
T |
|
| Q |
342 |
cagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgat |
441 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
49202170 |
cagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggattacttgat |
49202071 |
T |
|
| Q |
442 |
gataaatggtggcatgtt |
459 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49202070 |
gataaatggtggcatgtt |
49202053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 117 - 459
Target Start/End: Complemental strand, 49187415 - 49187073
Alignment:
| Q |
117 |
gttgactataatgtaactataccggatcacttttttggtgattgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaa |
216 |
Q |
| |
|
|||| |||| || ||||||||| | || ||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49187415 |
gttggctattatataactatactgtattacttttttggtgattaaaactttggatggtgtaggtacaagaagcaaactgggagctgtacaagaaacagaa |
49187316 |
T |
|
| Q |
217 |
ggaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagca |
316 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
49187315 |
agagactgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagctgaagca |
49187216 |
T |
|
| Q |
317 |
gagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaact |
416 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||| ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
49187215 |
gagctttatgcaaagaaaaaggaggcagagggaattgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgact |
49187116 |
T |
|
| Q |
417 |
acactgctgtaagggatttcttgatgataaatggtggcatgtt |
459 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
49187115 |
acacagctgtaagggattacttgatgataaatggtgacatgtt |
49187073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 155 - 459
Target Start/End: Complemental strand, 49207312 - 49207008
Alignment:
| Q |
155 |
tgattgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagagg |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49207312 |
tgattgaaattctggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgagaagaaggcagagg |
49207213 |
T |
|
| Q |
255 |
cagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgt |
354 |
Q |
| |
|
||||||| || |||||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | |
|
|
| T |
49207212 |
cagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattat |
49207113 |
T |
|
| Q |
355 |
gacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggc |
454 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
49207112 |
gacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggc |
49207013 |
T |
|
| Q |
455 |
atgtt |
459 |
Q |
| |
|
||||| |
|
|
| T |
49207012 |
atgtt |
49207008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 158 - 459
Target Start/End: Complemental strand, 49211883 - 49211582
Alignment:
| Q |
158 |
ttgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcag |
257 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49211883 |
ttgaaattctggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgagaagaaggcagaggcag |
49211784 |
T |
|
| Q |
258 |
aagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgac |
357 |
Q |
| |
|
||||||| |||||||| ||||| | |||||||||||||||| ||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||| |
|
|
| T |
49211783 |
aagcacaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgac |
49211684 |
T |
|
| Q |
358 |
acttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatg |
457 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||||| || || |||||||||| |||||||||||||||||||||| |
|
|
| T |
49211683 |
acttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaagggattacttgatgataaatggtggcatg |
49211584 |
T |
|
| Q |
458 |
tt |
459 |
Q |
| |
|
|| |
|
|
| T |
49211583 |
tt |
49211582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 148 - 459
Target Start/End: Complemental strand, 37030530 - 37030219
Alignment:
| Q |
148 |
tttttggtgattgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaag |
247 |
Q |
| |
|
|||||||||||| ||| | ||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37030530 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
37030431 |
T |
|
| Q |
248 |
gcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagg |
347 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37030430 |
gcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
37030331 |
T |
|
| Q |
348 |
gaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaa |
447 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||| ||||| |||||| ||||||||||||||| ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
37030330 |
gaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattacttgatgataaa |
37030231 |
T |
|
| Q |
448 |
tggtggcatgtt |
459 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37030230 |
tggtggcatgtt |
37030219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 158 - 459
Target Start/End: Original strand, 32593220 - 32593521
Alignment:
| Q |
158 |
ttgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcag |
257 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || |||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593220 |
ttgaaattttggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagaggcag |
32593319 |
T |
|
| Q |
258 |
aagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgac |
357 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
32593320 |
aagcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgac |
32593419 |
T |
|
| Q |
358 |
acttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatg |
457 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
32593420 |
acttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatg |
32593519 |
T |
|
| Q |
458 |
tt |
459 |
Q |
| |
|
|| |
|
|
| T |
32593520 |
tt |
32593521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 176 - 459
Target Start/End: Complemental strand, 31527163 - 31526880
Alignment:
| Q |
176 |
taggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattag |
275 |
Q |
| |
|
||||||||||| || |||||||| | |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgt |
31527064 |
T |
|
| Q |
276 |
cagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaagg |
375 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31527063 |
cagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
31526964 |
T |
|
| Q |
376 |
ggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgtt |
459 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
31526963 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtt |
31526880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 158 - 459
Target Start/End: Complemental strand, 51824071 - 51823770
Alignment:
| Q |
158 |
ttgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcag |
257 |
Q |
| |
|
||||||||||| |||| || |||||||| || |||||||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51824071 |
ttgaaattctgaatggtttatgtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgagaagaaggcagaggcag |
51823972 |
T |
|
| Q |
258 |
aagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgac |
357 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
51823971 |
aagcacagaaagcattggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgac |
51823872 |
T |
|
| Q |
358 |
acttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatg |
457 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
51823871 |
acttggaaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatg |
51823772 |
T |
|
| Q |
458 |
tt |
459 |
Q |
| |
|
|| |
|
|
| T |
51823771 |
tt |
51823770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 143 - 459
Target Start/End: Complemental strand, 26756367 - 26756051
Alignment:
| Q |
143 |
tcacttttttggtgattgaaattctggatggaataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgaga |
242 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26756367 |
tcactattttggtgattcaaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgaga |
26756268 |
T |
|
| Q |
243 |
agaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagccgctgaagcagagctatatgcaaagaaaaaggaggc |
342 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||| | ||||||||||||||||| | ||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
26756267 |
agaagacagaggcagaagcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggc |
26756168 |
T |
|
| Q |
343 |
agagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatg |
442 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||| | ||||| | |||||||| ||||||||| | || || ||||||||||| | ||||||| |
|
|
| T |
26756167 |
ggaggggatcgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttggaggtgattatacagctgtaagggactacttgatg |
26756068 |
T |
|
| Q |
443 |
ataaatggtggcatgtt |
459 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26756067 |
ataaatggtggcatgtt |
26756051 |
T |
|
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