View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15775_low_6 (Length: 432)
Name: NF15775_low_6
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 41287357 - 41287089
Alignment:
| Q |
17 |
aaaatatgcatgacttatgatatcgagtgtggtagatgtatattttacaaattctaaaattattattgagatacaaatgagctttggtccacattcatta |
116 |
Q |
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| T |
41287357 |
aaaatatacatgacttatgatatcgagtgtggtagatgtatattttacaaattctaaaattattattgagatacaaatgagctttggtccacatttatta |
41287258 |
T |
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| Q |
117 |
aagaataacattggagtaagttcttaagtgtccgcttgtttgcttggattgaatggaactcaacgtgtaaggaaattggtaatatattaggattgtttat |
216 |
Q |
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| T |
41287257 |
aagaataacattggagtaagtttttaagtgtccgcttgtttgtttggattgaatggaactcaacgtgtaaggaaattggtaatatattaggattgtttat |
41287158 |
T |
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| Q |
217 |
attatttggagttatggtgtgagctctttggaatcaatgataatgtaaatgtagctaagctgcaactgt |
285 |
Q |
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| T |
41287157 |
attatttggagttatggtgtgagctctttggaatcaatgataatgtaaatgtagctaagctgcaactgt |
41287089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 278 - 414
Target Start/End: Complemental strand, 41279823 - 41279687
Alignment:
| Q |
278 |
gcaactgtccaaggcatctggaggaagcaataaagcacatctccatcgtcctcccatgcgcttcaaacttaacgtagattgatcttattttaccagcaat |
377 |
Q |
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| T |
41279823 |
gcaactgcccaaggcatctggaggaagcaataaagcacatgtccatcgtcctcccatgcgcttcaaaattaacgtagattgatcttattttaccagcaat |
41279724 |
T |
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| Q |
378 |
caaagattgacttcgtggtagttaaacgaattgcaac |
414 |
Q |
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| T |
41279723 |
caaagattgacttcgtggtggttaaacgaattgcaac |
41279687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 14590627 - 14590584
Alignment:
| Q |
155 |
tttgcttggattgaatggaactcaacgtgtaaggaaattggtaa |
198 |
Q |
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| T |
14590627 |
tttgcttggattgaatggaactcgacgtgtaaggacataggtaa |
14590584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 36826429 - 36826473
Alignment:
| Q |
155 |
tttgcttggattgaatggaactcaacgtgtaaggaaattggtaat |
199 |
Q |
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| T |
36826429 |
tttgcttggattgaatagaacttgacgtgtaaggacattggtaat |
36826473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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