View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15775_low_7 (Length: 368)
Name: NF15775_low_7
Description: NF15775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15775_low_7 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 160641 - 160287
Alignment:
| Q |
20 |
gcgagagcctaatctcttccgctagactcaatcgtcatcagtgactatataagatatttttctaccttaccat----------------gtaacaaacaa |
103 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
160641 |
gcgagagtctaatctcttccgttagactcaatcttcattagtgactatataagatatttttctaccttaccatataatggaatgacaaagtaacaaataa |
160542 |
T |
|
| Q |
104 |
atgacaaagtttgtattgtttttactgcattacctgttatagttacatattgagatgattggatgctatgagaaatcttaggcattgaaaggcggttgct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160541 |
atgacaaagtttgtattgtttttactgcattacctgttatagttacatattgagatgattggatgctatgagaaatcttaggcattgaaaggcggttgct |
160442 |
T |
|
| Q |
204 |
accttggacattgatcccatgttcaagagaaatcatgaaaatcataagccaagctactaccaacaacttcatgacctatgatggaattgaatggtgatac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160441 |
accttggacattgatcccatgttcaagagaaaacatgaaaatcataagccaagctactaccaacaacttcatgacctatgatggaattgaatggtgatac |
160342 |
T |
|
| Q |
304 |
cttagcatgggtctctagtcctaagcttttaagcaataagggaacttaacctttg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160341 |
cttagcatgggtctctagtcctaagcttttaagcaataagggaacttaacctttg |
160287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University