View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15776_high_2 (Length: 233)
Name: NF15776_high_2
Description: NF15776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15776_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 12344596 - 12344402
Alignment:
| Q |
18 |
ctaagagttcaacagcatgaacaaatcgagcatgaagtgtagtagtccaacgcatccttggagctctcatgcttctttttgctgggaatcttgacaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12344596 |
ctaagagttcaacagcatgaacaaatcgagcatgaagtgtagtagtccaacgcatccttggagctctcatgcttctttttgctgggaatcttgacaagaa |
12344497 |
T |
|
| Q |
118 |
tcttgacctcatcaaagcttgagattgaaaagggcttgaacttgtgttgtaggtgttagaaattgaagaaggtgtagtagtagtagtaccatcta |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12344496 |
tcttgacctcatcaaagcttgtgattgaaaagggcttgaacttgtgttgttggtgttagaaatagaagaaggtgtagtagtagtagtaccatcta |
12344402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 29258820 - 29258748
Alignment:
| Q |
26 |
tcaacagcatgaacaaatcgagcatgaagtgtagtagtccaacgcatccttggagctctcatgcttctttttg |
98 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | ||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
29258820 |
tcaacagcatgaacaaatctagcatgaagagtacttgtccatcgcattcttggtgctctcatgcttctttttg |
29258748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 27568739 - 27568805
Alignment:
| Q |
18 |
ctaagagttcaacagcatgaacaaatcgagcatgaagtgtagtagtccaacgcatccttggagctct |
84 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| || ||||||||||||||||| |||||||| |
|
|
| T |
27568739 |
ctaaaagttcaacagcatgaacaaagcgattatgaagagtggtagtccaacgcatcctcggagctct |
27568805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University