View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15776_low_1 (Length: 700)
Name: NF15776_low_1
Description: NF15776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15776_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 30 - 684
Target Start/End: Complemental strand, 53500207 - 53499557
Alignment:
| Q |
30 |
ttaaaaaattctaaaaattgatattatgcgttgtagttttatgtcttacataatgccttaaagttctgcacattttctttttgaatggatactcgtcttg |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500207 |
ttaaaaaattctaaaaattgatattatgcgttgtagttttatgtcttacataatgccttaaagttctgcacattttctttttgaatggatactcgtcttg |
53500108 |
T |
|
| Q |
130 |
tgaactagtcttggatgttgtttttatattggaacttgttcatagtcccattttgggtgcttatacaaattttgattgcaggggtcgtgagtttctttgg |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53500107 |
tgaactagtcttggatgttgtttttatattgaaacttgttcatagtcccattttgggtgcttatacaaattttgattgcaggagtcgtgagtttctttgg |
53500008 |
T |
|
| Q |
230 |
caagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500007 |
caagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttg |
53499908 |
T |
|
| Q |
330 |
gcatctgtaattgagtctttgtgaacaatttcctttgtaatttgatattttaaaaaatcatttttagtcaccaccttgtggttttatttaacttaaatta |
429 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499907 |
gcatctgtaa-tgagtctttgtgaacaatttcctttgtaatttgatattttaaaaaatcatttttagtcaccaccttgtggttttatttaacttaaatta |
53499809 |
T |
|
| Q |
430 |
gttatggacttccttttttgcttctggtgcatacagtttactaatactaataacatgttcatattttccacccaagcacggagattggtcatctcttata |
529 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53499808 |
gttatggacttccttttttgcttctggtgcatacaatttactaatac---taacatgttcatattttccacccaagcacggagattggtcaactcttata |
53499712 |
T |
|
| Q |
530 |
ttgtttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcata |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53499711 |
ttgtttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggcgtatatacgaagagtatttggccgttcctgtcata |
53499612 |
T |
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| Q |
630 |
aagggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaacactg |
684 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499611 |
aagggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaacactg |
53499557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 152 - 340
Target Start/End: Complemental strand, 53492087 - 53491898
Alignment:
| Q |
152 |
tttatattggaacttgttcatagtcccatttt-gggtgcttatacaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgctttt |
250 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
53492087 |
tttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgctttt |
53491988 |
T |
|
| Q |
251 |
gcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaat |
340 |
Q |
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| T |
53491987 |
gcaacagaggatgaagcacatgcagaggtattccgtcaagtagttattttaggaatctgccttaatatatgcatctttggcatctgtaat |
53491898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 194 - 331
Target Start/End: Complemental strand, 16071268 - 16071131
Alignment:
| Q |
194 |
acaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattccatcaagtag |
293 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| | ||||| |||||| |||||||||||||||||||||||| |
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| T |
16071268 |
acaaattttgattgcaggagtcgtgagtttctttggcaagaaggacacagtgcttttgcttctgaggaagaagcagatgcagaggtattccatcaagtag |
16071169 |
T |
|
| Q |
294 |
ttattttaggaatctgccttactatatgcatttttggc |
331 |
Q |
| |
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|| |||||||||| ||||||| ||| ||||| |||||| |
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| T |
16071168 |
ttgttttaggaatttgccttaatatttgcatatttggc |
16071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 53492300 - 53492184
Alignment:
| Q |
3 |
aaaactttcaagctttaaataaaaggcttaaaaaattctaaaaattgatattatgcgttgtagttttatgtcttacataatgccttaaagttctgcacat |
102 |
Q |
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||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| |
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| T |
53492300 |
aaaactttcaagctttatataagaggcttaaacaattccaaaaattgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccat |
53492201 |
T |
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| Q |
103 |
tttctttttgaatggat |
119 |
Q |
| |
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||||||||||||||||| |
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| T |
53492200 |
tttctttttgaatggat |
53492184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 533 - 679
Target Start/End: Complemental strand, 16070806 - 16070661
Alignment:
| Q |
533 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
632 |
Q |
| |
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|||||||||||||||| | |||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
16070806 |
tttttcaaaatactctggattgttgtt-tttcaggctctcgagatattggaattatataggcgtatatacgaagagtatttggcagttcctgtcataaag |
16070708 |
T |
|
| Q |
633 |
ggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaa |
679 |
Q |
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||||| ||||||| | ||| || | |||||||||||||| |||||| |
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| T |
16070707 |
ggtacgaaaagtgtaggggatacttgtggcggtgcaattttcaccaa |
16070661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 616
Target Start/End: Complemental strand, 53516572 - 53516521
Alignment:
| Q |
565 |
aggctcttgagatattggaattatataggtgtatatacgaagagtatttggc |
616 |
Q |
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||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
53516572 |
aggctcttgagatattggaattatacaggcatatgtacgaagagtatttggc |
53516521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 45354243 - 45354365
Alignment:
| Q |
184 |
gggtgcttatacaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattc |
283 |
Q |
| |
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|||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||| || ||||||||||| |
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| T |
45354243 |
gggtacttataccaattttaattgcaggagtcgtgagtttctttggcaagaaggacacactgcttttgcaacaaaggaggaagcagatacagaggtattc |
45354342 |
T |
|
| Q |
284 |
catcaagtagttattttaggaat |
306 |
Q |
| |
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|||||| ||||||||| |||||| |
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| T |
45354343 |
catcaaatagttatttcaggaat |
45354365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 646
Target Start/End: Original strand, 45354663 - 45354776
Alignment:
| Q |
533 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
632 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||||| |||||||| |||||||||||| || |||| || |||||||||||||| ||||||||| ||||| |
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| T |
45354663 |
tttttctaaatgttctaaactataattgtttcaggtgcttgagattttggaattatatcggcgtatctatgaagagtatttggcagttcctgtcgtaaag |
45354762 |
T |
|
| Q |
633 |
ggtacaaaaagtga |
646 |
Q |
| |
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|||| |||||||| |
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|
| T |
45354763 |
ggtaagaaaagtga |
45354776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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