View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15776_low_2 (Length: 412)

Name: NF15776_low_2
Description: NF15776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15776_low_2
NF15776_low_2
[»] chr5 (4 HSPs)
chr5 (18-402)||(9929619-9930008)
chr5 (332-372)||(43554550-43554590)
chr5 (337-372)||(36577671-36577706)
chr5 (331-372)||(39695988-39696029)
[»] chr8 (1 HSPs)
chr8 (147-236)||(30917473-30917562)
[»] scaffold0168 (1 HSPs)
scaffold0168 (303-350)||(21358-21405)
[»] chr3 (3 HSPs)
chr3 (329-366)||(34307767-34307804)
chr3 (332-372)||(25326455-25326495)
chr3 (329-372)||(29508473-29508517)
[»] chr6 (2 HSPs)
chr6 (332-372)||(17168453-17168493)
chr6 (344-372)||(24832617-24832645)
[»] chr4 (5 HSPs)
chr4 (303-354)||(18844425-18844476)
chr4 (332-372)||(3144642-3144682)
chr4 (303-355)||(14126065-14126117)
chr4 (332-372)||(23386175-23386215)
chr4 (332-372)||(24343536-24343576)
[»] chr2 (4 HSPs)
chr2 (303-372)||(21616791-21616862)
chr2 (331-365)||(1239649-1239683)
chr2 (314-372)||(19574007-19574065)
chr2 (336-372)||(23354646-23354682)
[»] chr7 (3 HSPs)
chr7 (303-353)||(7328641-7328691)
chr7 (332-372)||(4017784-4017824)
chr7 (336-372)||(29812658-29812694)
[»] chr1 (1 HSPs)
chr1 (332-372)||(42004937-42004977)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 9930008 - 9929619
Alignment:
Q  18 caatggttgaagatcgtgttgagtggccggtagttttgaaacggtgaagtgctggtccaggggactgcattgttgatccaacaatggtgctaccatccat 117  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9930008 caatggttgaagatcgtgtcgagtggccagtagtcttgaaacggtgaagtgctggtccaggggactgcattgttgatccaacaatggtgctaccatccat 9929909  T
Q  118 tgttcctatagtagactttcctagcttcacatgcttctttttcacagtcatgtgccatttctttaatgccttggatgtttgttcatcaaatattgatttt 217  Q
     ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9929908 ggttcctatagtggactttcctagctttacatgcttctttttcacagtcatgtgccatttctttaacgccttggatgtttgttcatcaaatattgatttt 9929809  T
Q  218 ttcatccttgaacccatctacatgatttttgtcaattagatcaatttcaaatgttaattcatagcgtgcaagtacaagcagatac-----atgaagcaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |     ||||||||||    
T  9929808 ttcatccttgaacccatctacatgatttttgtcaattagatcaatttcaaatgttaattcatagcatgcaagtacaagcagatgcaatctatgaagcaca 9929709  T
Q  313 aacacttctcggattagtcgtgtccgacaccgacacgacacatataattacactaaattaacatttgaaattaaaaacatgtatctacct 402  Q
     ||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9929708 gacactcctcgaattagtcgtgtccgataccgacacgacacatataattacactgaattaacatttgaaattaaaaacatgtatctacct 9929619  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 43554590 - 43554550
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  43554590 gtgtccgacaccgacacgacacctatgattacactaaatta 43554550  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 36577671 - 36577706
Alignment:
Q  337 cgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||||||||||| |||||||||    
T  36577671 cgacaccgacacgacacatataattatactaaatta 36577706  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 39695988 - 39696029
Alignment:
Q  331 cgtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||| |||||||||||||||| ||| ||||||||||||||    
T  39695988 cgtgtcggacaccgacacgacacctatgattacactaaatta 39696029  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 30917473 - 30917562
Alignment:
Q  147 catgcttctttttcacagtcatgtgccatttctttaatgccttggatgtttgttcatcaaatattgattttttcatccttgaacccatct 236  Q
    |||||||||||||||||||  |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||  |||| |||||||    
T  30917473 catgcttctttttcacagtattgtgccatttttttaacgcctttgatgtttggtcatcaaatattgattttttcattgttgatcccatct 30917562  T

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Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 21405 - 21358
Alignment:
Q  303 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacga 350  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  21405 atgaagcacagacacttctcggattaggcgtgtctgacaccgacacga 21358  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 34307767 - 34307804
Alignment:
Q  329 gtcgtgtccgacaccgacacgacacatataattacact 366  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  34307767 gtcgtgtccgacaccgacacgacacttataattacact 34307804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 25326495 - 25326455
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||| ||||||||  ||||||||||||||||||    
T  25326495 gtgtccgacaccaacacgacatctataattacactaaatta 25326455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 29508517 - 29508473
Alignment:
Q  329 gtcgtgtccgacaccgaca-cgacacatataattacactaaatta 372  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||    
T  29508517 gtcgtgtccgacaccaacatcgacacatataattacactgaatta 29508473  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 17168453 - 17168493
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  17168453 gtgtccgacaccgacacgacacctattattacactaaatta 17168493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 24832645 - 24832617
Alignment:
Q  344 gacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||||||||||||||    
T  24832645 gacacgacacatataattacactaaatta 24832617  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 18844425 - 18844476
Alignment:
Q  303 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacaca 354  Q
    |||||||||  |||||||||||||||| ||||||||||||||| || |||||    
T  18844425 atgaagcacggacacttctcggattaggcgtgtccgacaccgatacaacaca 18844476  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 3144642 - 3144682
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    ||||| |||||||||||||||| ||| ||||||||||||||    
T  3144642 gtgtctgacaccgacacgacacctatgattacactaaatta 3144682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 14126065 - 14126117
Alignment:
Q  303 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacacat 355  Q
    |||||||||| |||||  ||||||||| |||||||||||| ||||||| ||||    
T  14126065 atgaagcacatacactcttcggattaggcgtgtccgacacggacacgagacat 14126117  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 23386215 - 23386175
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||| ||||| ||| ||||||||||||||    
T  23386215 gtgtccgacaccgacatgacacctatgattacactaaatta 23386175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 24343576 - 24343536
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  24343576 gtgtcggacaccgacacgacacctataattacactgaatta 24343536  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 21616862 - 21616791
Alignment:
Q  303 atgaagcacaaacacttctcggattagtcgtgtccgacaccg-acacg-acacatataattacactaaatta 372  Q
    |||||||||  |||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||    
T  21616862 atgaagcacggacacttcttggattagccgtgtccggcaccggacacgtacacatataattacactgaatta 21616791  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Original strand, 1239649 - 1239683
Alignment:
Q  331 cgtgtccgacaccgacacgacacatataattacac 365  Q
    |||||| ||||||||||||||||||||||||||||    
T  1239649 cgtgtcggacaccgacacgacacatataattacac 1239683  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 19574065 - 19574007
Alignment:
Q  314 acacttctcggattagtcgtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    ||||| |||| |||||  |||||||||||||||||| ||| |||||||||||| |||||    
T  19574065 acactcctcgaattaggtgtgtccgacaccgacacgccacctataattacactgaatta 19574007  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 23354646 - 23354682
Alignment:
Q  336 ccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaatta 23354682  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 7328641 - 7328691
Alignment:
Q  303 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacac 353  Q
    ||||||||| ||||||  ||||||||| ||||||||||||| |||||||||    
T  7328641 atgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacac 7328691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 4017784 - 4017824
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||| ||||||||| ||| ||||||||||||||    
T  4017784 gtgtccgacaccaacacgacacttatgattacactaaatta 4017824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 29812658 - 29812694
Alignment:
Q  336 ccgacaccgacacgacacatataattacactaaatta 372  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaatta 29812694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 42004937 - 42004977
Alignment:
Q  332 gtgtccgacaccgacacgacacatataattacactaaatta 372  Q
    ||||||||||||||||| |||| ||| ||||||||||||||    
T  42004937 gtgtccgacaccgacacaacacctatgattacactaaatta 42004977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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