View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15776_low_3 (Length: 341)
Name: NF15776_low_3
Description: NF15776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15776_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 26158200 - 26157972
Alignment:
| Q |
32 |
aaaatctgcaccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagccctttatcggtttgaccgcaataaccaagaagtat |
131 |
Q |
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| T |
26158200 |
aaaatttgcaccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagccctttatcggtttgaccgcaataaccaagaagtat |
26158101 |
T |
|
| Q |
132 |
ccatttcaagtttacaccgaatcttccaatgtattctaggcctttatctgtcaaccctcccgacctaagatacagagcaaatcttctaagttttacacaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158100 |
ccatttcaagtttacaccgaatcttccaatgtattctaggtctttatctgtcaaccctcccgacctaagatacagagcaaatcttctaagttttacacaa |
26158001 |
T |
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| Q |
232 |
ccttgtagtaattcctttactccatcatc |
260 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26158000 |
ccttgtagtaattcctttactccatcatc |
26157972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26158207 - 26158244
Alignment:
| Q |
1 |
aggttgtgctaggtgttgctgcatataatttaaaatct |
38 |
Q |
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| T |
26158207 |
aggttgtgctaggtgtagctgcatataatttaaaatct |
26158244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 28268152 - 28268103
Alignment:
| Q |
275 |
aacctgtgtacattcaataagaaatatatttttggatattgacttggagc |
324 |
Q |
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| T |
28268152 |
aacctgtgtacattcaataagaaatatatttttggatattgacttggagc |
28268103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 35094263 - 35094367
Alignment:
| Q |
40 |
caccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagccctttatcggtttgaccgcaataaccaagaagtatccatttca |
139 |
Q |
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|||||||| ||||| | |||||||||||| ||||||||| |||||| ||||| |||||| ||| |||| ||| |||||| |||||||||||| ||| |
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| T |
35094263 |
caccctctcatttcgagtttctgaagactcggacaacctttggagaattccaagagccctgcatcagtttcgccgacataaccgagaagtatccatctca |
35094362 |
T |
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| Q |
140 |
agttt |
144 |
Q |
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|||| |
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| T |
35094363 |
cgttt |
35094367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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