View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_high_14 (Length: 427)

Name: NF15777_high_14
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_high_14
NF15777_high_14
[»] chr8 (4 HSPs)
chr8 (1-79)||(21272266-21272344)
chr8 (118-183)||(21272343-21272408)
chr8 (333-411)||(18975080-18975157)
chr8 (333-376)||(14368086-14368129)
[»] chr7 (2 HSPs)
chr7 (333-411)||(5330717-5330794)
chr7 (293-336)||(39615686-39615729)
[»] chr3 (2 HSPs)
chr3 (333-411)||(19806528-19806605)
chr3 (333-376)||(10814640-10814683)
[»] chr5 (2 HSPs)
chr5 (293-329)||(1581247-1581283)
chr5 (293-329)||(1603532-1603568)
[»] chr6 (1 HSPs)
chr6 (333-376)||(19575427-19575470)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 21272266 - 21272344
Alignment:
Q  1 tttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272266 tttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 21272344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 21272343 - 21272408
Alignment:
Q  118 tatttcacattcaatatgatgggtgtagaaaaaggtcctctttcgtctgtaggtaatgtatataaa 183  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21272343 tatttcacattcaatatgatgggtgtagaaaaaggtactctttcgtctgtaggtaatgtatataaa 21272408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 18975080 - 18975157
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcctatttt 411  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| |||| ||||    
T  18975080 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcctgtttt 18975157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 14368086 - 14368129
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatat 376  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  14368086 ctttattagcttgagaaggaacattggacttagattttccatat 14368129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 5330794 - 5330717
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcctatttt 411  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| |||| ||||    
T  5330794 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcctgtttt 5330717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Complemental strand, 39615729 - 39615686
Alignment:
Q  293 agctataaacttgtttatttgtgtctgcatttaactggtacttt 336  Q
    |||||||||||||||||||| | ||||||||||||| |||||||    
T  39615729 agctataaacttgtttatttctttctgcatttaactagtacttt 39615686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 19806605 - 19806528
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcctatttt 411  Q
    |||||||| ||| |||||||||||| |||||||||||||||||| || |||  |||||||||||||||| |||| ||||    
T  19806605 ctttattagcttaagaaggaacattggacttagattttccatatatt-cagaatttgctttctttcattagcctgtttt 19806528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 10814683 - 10814640
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatat 376  Q
    |||||||| |||||||||||||||| |||||||| |||||||||    
T  10814683 ctttattagcttgagaaggaacattggacttagactttccatat 10814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 1581247 - 1581283
Alignment:
Q  293 agctataaacttgtttatttgtgtctgcatttaactg 329  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1581247 agctataaacttgtttatttgtttctgcatttaactg 1581283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 1603568 - 1603532
Alignment:
Q  293 agctataaacttgtttatttgtgtctgcatttaactg 329  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1603568 agctataaacttgtttatttgtttctgcatttaactg 1603532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 19575470 - 19575427
Alignment:
Q  333 ctttattatcttgagaaggaacattcgacttagattttccatat 376  Q
    |||||||| |||||||||||||||| |||||||||||| |||||    
T  19575470 ctttattagcttgagaaggaacattggacttagatttttcatat 19575427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University