View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_high_23 (Length: 380)

Name: NF15777_high_23
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_high_23
NF15777_high_23
[»] chr6 (35 HSPs)
chr6 (22-358)||(27604328-27604665)
chr6 (22-358)||(26802669-26803004)
chr6 (22-358)||(27592645-27592980)
chr6 (22-358)||(27677244-27677574)
chr6 (22-358)||(27679173-27679508)
chr6 (22-358)||(27706028-27706362)
chr6 (201-358)||(27698297-27698454)
chr6 (238-358)||(27718219-27718339)
chr6 (238-358)||(27610842-27610962)
chr6 (22-358)||(27427236-27427566)
chr6 (22-141)||(28786677-28786796)
chr6 (22-141)||(28792798-28792917)
chr6 (168-358)||(26884392-26884580)
chr6 (22-138)||(28781543-28781659)
chr6 (247-358)||(28786505-28786616)
chr6 (247-358)||(28792626-28792737)
chr6 (247-351)||(28781373-28781477)
chr6 (247-358)||(26861840-26861951)
chr6 (24-115)||(27698212-27698301)
chr6 (211-353)||(25538772-25538914)
chr6 (181-357)||(27530983-27531156)
chr6 (67-353)||(26646711-26646992)
chr6 (67-353)||(26752679-26752960)
chr6 (223-353)||(25579951-25580081)
chr6 (223-353)||(26143097-26143227)
chr6 (247-353)||(27214652-27214758)
chr6 (247-353)||(27234470-27234576)
chr6 (256-353)||(26656221-26656318)
chr6 (256-353)||(26762192-26762289)
chr6 (311-353)||(25506897-25506939)
chr6 (22-60)||(27610744-27610782)
chr6 (328-358)||(27724775-27724805)
chr6 (256-353)||(27337923-27338020)
chr6 (256-353)||(27398663-27398760)
chr6 (47-110)||(26143338-26143399)
[»] scaffold0349 (3 HSPs)
scaffold0349 (238-358)||(3260-3381)
scaffold0349 (238-358)||(14196-14316)
scaffold0349 (22-60)||(14097-14135)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-358)||(59797-60127)
[»] chr4 (10 HSPs)
chr4 (22-358)||(18073989-18074319)
chr4 (22-347)||(18731124-18731440)
chr4 (22-137)||(18723705-18723819)
chr4 (33-137)||(18655108-18655211)
chr4 (33-137)||(18699031-18699134)
chr4 (22-137)||(18679180-18679301)
chr4 (256-336)||(18655322-18655402)
chr4 (256-336)||(18723930-18724010)
chr4 (256-346)||(18699245-18699335)
chr4 (247-346)||(18679403-18679502)
[»] scaffold0277 (4 HSPs)
scaffold0277 (256-358)||(4529-4631)
scaffold0277 (22-138)||(13299-13415)
scaffold0277 (22-141)||(4336-4457)
scaffold0277 (256-351)||(13490-13585)
[»] scaffold0419 (2 HSPs)
scaffold0419 (22-138)||(7929-8045)
scaffold0419 (256-351)||(7759-7854)
[»] chr1 (5 HSPs)
chr1 (28-141)||(267976-268094)
chr1 (248-353)||(28127516-28127621)
chr1 (248-344)||(28164200-28164296)
chr1 (256-327)||(268202-268273)
chr1 (84-135)||(28164048-28164100)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 27604328 - 27604665
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-ttt 120  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  27604328 ataagttagtatgtaacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgttt 27604427  T
Q  121 aaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaatag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27604428 aaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaatag 27604527  T
Q  221 gatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgt 320  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||    
T  27604528 gatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgt 27604627  T
Q  321 ttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    | | || ||||||||||||||| |||| ||||||||||    
T  27604628 tatcctcatcattttgaaacctttttttatgctcagcc 27604665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 26803004 - 26802669
Alignment:
Q  22 ataagttagtatgta---acaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt- 117  Q
    |||||||||||||||   ||||| |||||||||||||||||||  |||| |||||||||||||||||||||||||   |||||||||||||||||||||     
T  26803004 ataagttagtatgtactaacaacatcacaatcacatccatgta--ctcataatatattatacatttctaactatttcaacatataaataactaatacttg 26802907  T
Q  118 tttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaa 217  Q
    |||||||||||| |||| ||||||||||   | ||||||||||| || |||||||||||||| ||||||| ||||| ||| |||||| ||||||||||||    
T  26802906 tttaaaaacgtatataagaaaggtattt---cccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaa 26802810  T
Q  218 taggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctcca 317  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  26802809 taggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctcca 26802710  T
Q  318 tgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    |||| | |||||||||||||||||| |||||||||||||||    
T  26802709 tgttatccttatcattttgaaaccttttttcatgctcagcc 26802669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 27592645 - 27592980
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---cttt 118  Q
    |||||||||| | ||||||| |||||||||||||||||||  || ||||| |||||||||||||||||||||  |||||||||||||||||||   |||     
T  27592645 ataagttagtgtctaacaacatcacaatcacatccatgta--ctaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttg 27592742  T
Q  119 ttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaa 217  Q
    || ||||| ||| |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| ||||| ||| |||||| ||||||||||||    
T  27592743 tttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaa 27592839  T
Q  218 taggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctcca 317  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||| ||||||||||||||    
T  27592840 taggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctcca 27592939  T
Q  318 tgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  27592940 tgtttttcggatcattttgaaacctcttttcatgctcagcc 27592980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 27677244 - 27677574
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatact--ttt 119  Q
    |||||||||| | ||||||| |||||||||||||||||||  ||   ||| |||||||||||||||||||||  ||||||||||||||||||| |  |||    
T  27677244 ataagttagtgtctaacaacatcacaatcacatccatgta--ct---aatgtattatacatttctaactatttcgacatataaataactaatagtacttt 27677338  T
Q  120 taaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaata 219  Q
    |||||  ||| |||||||||||||||   | | ||||||||| || |||||||||||| | ||||||| ||||| ||| |||||| ||||||||||||||    
T  27677339 taaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaata 27677435  T
Q  220 ggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatg 319  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  27677436 ggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatg 27677535  T
Q  320 tttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
     |||||  |||||||||||||||||||||||||||||||    
T  27677536 cttttcggatcattttgaaacctcttttcatgctcagcc 27677574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 27679508 - 27679173
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---cttt 118  Q
    |||||||||| | ||||||| |||||||||||||||||||  || ||||| |||||||||||||||||||||  |||||||||||||||||||   |||     
T  27679508 ataagttagtgtctaacaacatcacaatcacatccatgta--ctaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttg 27679411  T
Q  119 ttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaa 217  Q
    || ||||| ||| |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| ||||| ||| |||||| ||||||||||||    
T  27679410 tttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaa 27679314  T
Q  218 taggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctcca 317  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||  |||||||||||||    
T  27679313 taggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctcca 27679214  T
Q  318 tgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  27679213 tgtttttcggatcattttgaaacctcttttcatgctcagcc 27679173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 27706028 - 27706362
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---cttt 118  Q
    |||||||||| | ||||||| || ||||||||||||||||  || ||||| |||||| ||||||||||||||  |||||||||||||||||||   |||     
T  27706028 ataagttagtgtctaacaacatcccaatcacatccatgta--ctaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttg 27706125  T
Q  119 ttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaa 217  Q
    || ||||| ||| |||||||||||||||     | ||||| ||| || |||||||||||| | ||||||| ||||| ||| |||||| ||||||||||||    
T  27706126 tttaaaactgtatataaaaaaggtatttc----cctttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaa 27706221  T
Q  218 taggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctcca 317  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  27706222 taggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctcca 27706321  T
Q  318 tgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  27706322 tgtttttcggatcattttgaaacctcttttcatgctcagcc 27706362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 201 - 358
Target Start/End: Original strand, 27698297 - 27698454
Alignment:
Q  201 aatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttcca 300  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  27698297 aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca 27698396  T
Q  301 tcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  27698397 tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcc 27698454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 27718219 - 27718339
Alignment:
Q  238 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 337  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27718219 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttga 27718318  T
Q  338 aacctcttttcatgctcagcc 358  Q
    |||||||||||||||||||||    
T  27718319 aacctcttttcatgctcagcc 27718339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 27610842 - 27610962
Alignment:
Q  238 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 337  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  27610842 gtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttga 27610941  T
Q  338 aacctcttttcatgctcagcc 358  Q
    |||||||||||||||||||||    
T  27610942 aacctcttttcatgctcagcc 27610962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 27427236 - 27427566
Alignment:
Q  22 ataagttagtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-t 118  Q
    |||||||||||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |    
T  27427236 ataagttagtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgt 27427333  T
Q  119 ttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaat 218  Q
    |||||||| |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||      
T  27427334 ttaaaaacataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac- 27427426  T
Q  219 aggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccat 318  Q
    |||| ||||||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||    
T  27427427 aggaattaagtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccat 27427526  T
Q  319 gtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  27427527 gtttttcgtatcattttgaaacctattttcatgctcagcc 27427566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 28786796 - 28786677
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tt 119  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| |||||| | ||||||| ||    
T  28786796 ataagttagtatgtaacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtt 28786699  T
Q  120 taaaaacgtaaataaaaaaggt 141  Q
    |||||||||||||| |||||||    
T  28786698 taaaaacgtaaatagaaaaggt 28786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 28792917 - 28792798
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tt 119  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| |||||| | ||||||| ||    
T  28792917 ataagttagtatgtaacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtt 28792820  T
Q  120 taaaaacgtaaataaaaaaggt 141  Q
    |||||||||||||| |||||||    
T  28792819 taaaaacgtaaatagaaaaggt 28792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 358
Target Start/End: Complemental strand, 26884580 - 26884392
Alignment:
Q  168 gagattattgggcaatt-gaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccgg 266  Q
    |||||||||||| |||| |||||| || |||||||||| ||||  | |||||| ||||||||||| || |  |||| | ||   |||  |||||||||||    
T  26884580 gagattattggggaatttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccgg 26884484  T
Q  267 aaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    | ||||||||| | || |||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||    
T  26884483 acaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagcc 26884392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 28781659 - 28781543
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tt 119  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| |||||| | |||| || ||    
T  28781659 ataagttagtatgtaacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtt 28781562  T
Q  120 taaaaacgtaaataaaaaa 138  Q
    |||||||||||||| ||||    
T  28781561 taaaaacgtaaatagaaaa 28781543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 28786616 - 28786505
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  347 tcatgctcagcc 358  Q
    |||||| |||||    
T  28786516 tcatgcccagcc 28786505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 28792737 - 28792626
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  347 tcatgctcagcc 358  Q
    |||||| |||||    
T  28792637 tcatgcccagcc 28792626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 28781477 - 28781373
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  347 tcatg 351  Q
    |||||    
T  28781377 tcatg 28781373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 26861951 - 26861840
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||  ||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||| | | |||||||||||||||| |||    
T  26861951 aggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttt 26861852  T
Q  347 tcatgctcagcc 358  Q
    ||||||| ||||    
T  26861851 tcatgcttagcc 26861840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 27698212 - 27698301
Alignment:
Q  24 aagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatac 115  Q
    ||||||||||| |||||| ||||||||||||| |||||  |||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  27698212 aagttagtatgaaacaacatcacaatcacatctatgta--ctcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 25538914 - 25538772
Alignment:
Q  211 ggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaac 310  Q
    ||||||| | ||||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  ||||     
T  25538914 ggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaat 25538815  T
Q  311 ctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    | |||||||||||||| || |||||||||||||| ||||||||    
T  25538814 cgctccatgtttttctcattattttgaaacctctcttcatgct 25538772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 357
Target Start/End: Original strand, 27530983 - 27531156
Alignment:
Q  181 aattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagca 280  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||||| || |  ||||    | |  ||| ||| | ||| || |||||||| ||     
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacc---catgtttataatgctggccagacaagttagccgct 27531079  T
Q  281 tggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagc 357  Q
    |||||||||||  |||||||| |||||||||||||  |||| | |||||||||||||||| | |||| |||| ||||    
T  27531080 tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagc 27531156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 353
Target Start/End: Complemental strand, 26646992 - 26646711
Alignment:
Q  67 agaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctc-atttaaccttgaa 164  Q
    ||||||||||||||| |||||||| || |||||||||||||| | |||||| ||||||||| | ||||||||   ||| || |  | |||||| ||| ||    
T  26646992 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaa---tatgtgtttcctatttaagctttaa 26646896  T
Q  165 tatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagcc 264  Q
     |||||||| ||| | ||   ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||    
T  26646895 gatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatcc 26646800  T
Q  265 ggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||| ||||||||||| ||| |||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26646799 ggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26646711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 353
Target Start/End: Complemental strand, 26752960 - 26752679
Alignment:
Q  67 agaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctc-atttaaccttgaa 164  Q
    ||||||||||||||| |||||||| || |||||||||||||| | |||||| ||||||||| | ||||||||   ||| || |  | |||||| ||| ||    
T  26752960 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaa---tatgtgtttcctatttaagctttaa 26752864  T
Q  165 tatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagcc 264  Q
     |||||||| ||| | ||   ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||    
T  26752863 gatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatcc 26752768  T
Q  265 ggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||| ||||||||||| ||| |||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26752767 ggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26752679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 25580081 - 25579951
Alignment:
Q  223 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 322  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  323 ttcttatcattttgaaacctcttttcatgct 353  Q
    ||||  | |||||||||||||| ||||||||    
T  25579981 ttctcgttattttgaaacctctcttcatgct 25579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 26143227 - 26143097
Alignment:
Q  223 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 322  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgttt 26143128  T
Q  323 ttcttatcattttgaaacctcttttcatgct 353  Q
    ||||  | |||||||||||||| ||||||||    
T  26143127 ttctcgttattttgaaacctctcttcatgct 26143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 27214758 - 27214652
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T
Q  347 tcatgct 353  Q
    |||||||    
T  27214658 tcatgct 27214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 27234470 - 27234576
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T
Q  347 tcatgct 353  Q
    |||||||    
T  27234570 tcatgct 27234576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 26656318 - 26656221
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26656318 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 26762289 - 26762192
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26762289 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 25506897 - 25506939
Alignment:
Q  311 ctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||    
T  25506897 ctctccatgtttttcttattattttgaaacttctcttcatgct 25506939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 27610744 - 27610782
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgt 60  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  27610744 ataagttagtatgtgacaacatcacaatcacatccatgt 27610782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 358
Target Start/End: Original strand, 27724775 - 27724805
Alignment:
Q  328 atcattttgaaacctcttttcatgctcagcc 358  Q
    |||||||||||||||||||||||||||||||    
T  27724775 atcattttgaaacctcttttcatgctcagcc 27724805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 27337923 - 27338020
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 27398663 - 27398760
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 353  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 26143399 - 26143338
Alignment:
Q  47 aatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact 110  Q
    |||||||||||||||   | |||||||||||| || |||||||| || ||||||||||||||||    
T  26143399 aatcacatccatgtat--tgagaatatattatgcaattctaacttttttgacatataaataact 26143338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 3260 - 3381
Alignment:
Q  238 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatg-tttttcttatcattttg 336  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  3260 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttg 3359  T
Q  337 aaacctcttttcatgctcagcc 358  Q
    ||||||||||||||||||||||    
T  3360 aaacctcttttcatgctcagcc 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 14196 - 14316
Alignment:
Q  238 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 337  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||    
T  14196 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttga 14295  T
Q  338 aacctcttttcatgctcagcc 358  Q
    |||||||||||||||||||||    
T  14296 aacctcttttcatgctcagcc 14316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 14097 - 14135
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgt 60  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  14097 ataagttagtatgtgacaacatcacaatcacatccatgt 14135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 60127 - 59797
Alignment:
Q  22 ataagttagtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-t 118  Q
    |||||||||||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |    
T  60127 ataagttagtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgt 60030  T
Q  119 ttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaat 218  Q
    |||||||| |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||      
T  60029 ttaaaaacataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac- 59937  T
Q  219 aggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccat 318  Q
    |||| ||||||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||    
T  59936 aggaattaagtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccat 59837  T
Q  319 gtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  59836 gtttttcgtatcattttgaaacctattttcatgctcagcc 59797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 18074319 - 18073989
Alignment:
Q  22 ataagttagtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-t 118  Q
    |||||||||||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |    
T  18074319 ataagttagtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgt 18074222  T
Q  119 ttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaat 218  Q
    |||||||| |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||      
T  18074221 ttaaaaacataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac- 18074129  T
Q  219 aggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccat 318  Q
    |||| ||||||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||    
T  18074128 aggaattaagtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccat 18074029  T
Q  319 gtttttcttatcattttgaaacctcttttcatgctcagcc 358  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  18074028 gtttttcgtatcattttgaaacctattttcatgctcagcc 18073989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 18731124 - 18731440
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-ttt 120  Q
    |||||| ||||||||||||| ||||| ||||||||||||   |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||    
T  18731124 ataagtcagtatgtaacaacatcacagtcacatccatgtc--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgttt 18731221  T
Q  121 aaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaatag 220  Q
    ||||| ||||| ||||||||| ||   ||  |||||  ||| || |||  ||||||| | |||  ||||| |||||| ||||| ||||| || |||| |     
T  18731222 aaaaatgtaaa-aaaaaaggtgtt---tccaatttaggctttaagatggtattattgaggaataaaaattaaataaataaaatgcaaaatgg-aaaacaa 18731316  T
Q  221 gatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgt 320  Q
    || |||||||| |  |||||||    | |||||  |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||    
T  18731317 gaattaagtaaagaggagtacc---catgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgt 18731413  T
Q  321 ttttcttatcattttgaaacctctttt 347  Q
    ||||||| | |||||| || |||||||    
T  18731414 ttttcttgttattttggaaactctttt 18731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 18723705 - 18723819
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-ttt 120  Q
    |||||| ||||||||||||| ||||| |||||||||| ||  |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||    
T  18723705 ataagtcagtatgtaacaacatcacagtcacatccattta--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgttt 18723802  T
Q  121 aaaaacgtaaataaaaa 137  Q
    ||||| |||||||||||    
T  18723803 aaaaatgtaaataaaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 18655108 - 18655211
Alignment:
Q  33 tgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaa 131  Q
    ||||||||| ||||| |||||||||| ||  |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||    
T  18655108 tgtaacaacatcacagtcacatccattta--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaa 18655205  T
Q  132 taaaaa 137  Q
    ||||||    
T  18655206 taaaaa 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 18699031 - 18699134
Alignment:
Q  33 tgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaa 131  Q
    ||||||||| ||||| ||||||||||||   |||| | ||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||     
T  18699031 tgtaacaacatcacagtcacatccatgtc--ctcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgtaat 18699128  T
Q  132 taaaaa 137  Q
    ||||||    
T  18699129 taaaaa 18699134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 18679180 - 18679301
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaa-------ctattgtgacatataaataactaata 114  Q
    |||||| ||||||||||||| ||||| ||||| |||||||  |||| ||||||| ||||||||||||       ||||| |||| |||||||||||||||    
T  18679180 ataagtcagtatgtaacaacatcacagtcacacccatgta--ctcataatatatcatacatttctaaattcaaactattttgacttataaataactaata 18679277  T
Q  115 ctt-tttaaaaacgtaaataaaaa 137  Q
    ||| ||||||||||||||||||||    
T  18679278 cttgtttaaaaacgtaaataaaaa 18679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 18655322 - 18655402
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 336  Q
    |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18655322 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18655402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 18723930 - 18724010
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 336  Q
    |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18723930 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 18699245 - 18699335
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| ||||||||||||||| | |||||| || ||||||    
T  18699245 atggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactcttt 18699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 18679403 - 18679502
Alignment:
Q  247 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 346  Q
    |||||||  |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| |||||||||||| || | |||||| || ||||||    
T  18679403 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaaactcttt 18679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 4529 - 4631
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 355  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  356 gcc 358  Q
    |||    
T  4629 gcc 4631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 13299 - 13415
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tt 119  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| || ||| | ||||||| ||    
T  13299 ataagttagtatgtaacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtt 13396  T
Q  120 taaaaacgtaaataaaaaa 138  Q
    |||||||||||||| ||||    
T  13397 taaaaacgtaaatagaaaa 13415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 4336 - 4457
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatat--tatacatttctaactattgtgacatataaataact-aatactt- 117  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| |||||||  |||||||||||||||||||||||||| || ||| | |||||||     
T  4336 ataagttagtatgtaacaacatcacaatcacatccatgt--actcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttg 4433  T
Q  118 tttaaaaacgtaaataaaaaaggt 141  Q
    |||||||||||||||| |||||||    
T  4434 tttaaaaacgtaaatataaaaggt 4457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 13490 - 13585
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatg 351  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatg 13585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 8045 - 7929
Alignment:
Q  22 ataagttagtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tt 119  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| || ||| | ||||||| ||    
T  8045 ataagttagtatgtaacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtt 7948  T
Q  120 taaaaacgtaaataaaaaa 138  Q
    |||||||||||||| ||||    
T  7947 taaaaacgtaaatagaaaa 7929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 7854 - 7759
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatg 351  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatg 7759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 267976 - 268094
Alignment:
Q  28 tagtatgtaacaacgtcaca--atcacatccatgtag--actcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaa 122  Q
    |||||||||||||| |||||  |||||||||||| |   ||||| |||||||||||| ||||||||||||  | |||||||| ||||||||||| ||||     
T  267976 tagtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttag 268075  T
Q  123 aaacgtaaataaaaaaggt 141  Q
    |||||||||||||||||||    
T  268076 aaacgtaaataaaaaaggt 268094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 28127516 - 28127621
Alignment:
Q  248 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctctttt 347  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| ||||||| |     
T  28127516 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctc 28127615  T
Q  348 catgct 353  Q
    ||||||    
T  28127616 catgct 28127621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 28164200 - 28164296
Alignment:
Q  248 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctct 344  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| |||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctct 28164296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 268202 - 268273
Alignment:
Q  256 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttctt 327  Q
    ||||||||| || ||||||| ||| ||| |||||||||  |||||| | ||||||| |||||||||||||||    
T  268202 atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttttctt 268273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 28164048 - 28164100
Alignment:
Q  84 tctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaa 135  Q
    |||||||||| ||||||||||||| || |||||| ||||||||| ||||||||    
T  28164048 tctaactattttgacatataaatatcttatacttgtttaaaaacataaataaa 28164100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University