View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_high_27 (Length: 341)
Name: NF15777_high_27
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 40897703 - 40897400
Alignment:
| Q |
24 |
agatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaactgctgctgta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40897703 |
agatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaactgctgctgta |
40897604 |
T |
|
| Q |
124 |
accgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatactacattcattc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40897603 |
accgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatactacattcattc |
40897504 |
T |
|
| Q |
224 |
cttgaggcagggctttgtattagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctatcggggaattca |
323 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40897503 |
cttgaggcagggctttgtattatagagaaatttgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctatcggggaattca |
40897404 |
T |
|
| Q |
324 |
tgat |
327 |
Q |
| |
|
|||| |
|
|
| T |
40897403 |
tgat |
40897400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 44153048 - 44152745
Alignment:
| Q |
24 |
agatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaactgctgctgta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153048 |
agatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaactgctgctgta |
44152949 |
T |
|
| Q |
124 |
accgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatactacattcattc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44152948 |
accgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatactacattcattc |
44152849 |
T |
|
| Q |
224 |
cttgaggcagggctttgtattagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctatcggggaattca |
323 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44152848 |
cttgaggcagggctttgtaatagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatataaggttctatcggggaattca |
44152749 |
T |
|
| Q |
324 |
tgat |
327 |
Q |
| |
|
|||| |
|
|
| T |
44152748 |
tgat |
44152745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University