View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_high_28 (Length: 329)
Name: NF15777_high_28
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 9908566 - 9908254
Alignment:
| Q |
18 |
agatgtgatagaaaaagagtgaaagaaagaaaataagatgttgagtgaatatatgaaatattgagtatttaaatataagagttggtttcaaaaatcacaa |
117 |
Q |
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| T |
9908566 |
agatgtgatagaaaaagagtgaaagaaagaaaataagatgtcgagtgaatgtatgaaatattgagtatttaaatataagagttggtttcaaaaatcacaa |
9908467 |
T |
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| Q |
118 |
atagtatgttagaaaagttcaaggttcggtttataatttatatgataggatgaattttgatcctaaatgaa-ttaaaaaatttgttgttttttccaataa |
216 |
Q |
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| T |
9908466 |
atagtatgttagaaaagttcaaggttcggtttataatttatatgataggatgaattttgatcctaaatgaatttaaaaaatttgttgttttttccaataa |
9908367 |
T |
|
| Q |
217 |
aacttacagaagtaactttcttgtatatttgagcagggttggagcactcgctatatggaaactcagaagtgaacaactctatcatacacatgccaaaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9908366 |
aacttacagaagtaactttcttgtatatttgagcagggttggagcactcgctgtatggaaactcagaagtgaacaactctatcatacacatgccaaaaga |
9908267 |
T |
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| Q |
317 |
gtat-tatctacc |
328 |
Q |
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|||| |||||||| |
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| T |
9908266 |
gtatatatctacc |
9908254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 27092303 - 27092379
Alignment:
| Q |
231 |
actttcttgtatatttgagcagggttggagcactcgctatatggaaactcagaagtgaacaactctatcatacacat |
307 |
Q |
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| T |
27092303 |
actttcttgtatatttgagctgggttggagcactcattgtatggaaactcaagagtaagcatctctatcatacacat |
27092379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 27185998 - 27185922
Alignment:
| Q |
231 |
actttcttgtatatttgagcagggttggagcactcgctatatggaaactcagaagtgaacaactctatcatacacat |
307 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||| ||| | || ||||||||||||||| |
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| T |
27185998 |
actttcttgtatatttgagctgggttggagcactcattgtatggaaactcaagagtaagcatctctatcatacacat |
27185922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 36200493 - 36200459
Alignment:
| Q |
216 |
aaacttacagaagtaactttcttgtatatttgagc |
250 |
Q |
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| T |
36200493 |
aaacttacagaaataactttcttgtatatttgagc |
36200459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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