View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_high_33 (Length: 294)
Name: NF15777_high_33
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 41566805 - 41566544
Alignment:
| Q |
15 |
caaaggggtgtggtaactttactaaagtacaagaagctgttaatgctgttccggactgatcaagttctcatgccacccttatcatactcaattctggaac |
114 |
Q |
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| T |
41566805 |
caaaggggtgtggtaactttactaaagtacaagaagctgttaatgctgttccggactgatcaagttctcatgccacccttatcatactcaattctggaac |
41566706 |
T |
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| Q |
115 |
atacaggttatcttcctttaatgtttttattgatacatatttcttggtgtttgattaatgatgaattttataactatacataaatgacacaattagacaa |
214 |
Q |
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| T |
41566705 |
atacaggttatcttcctttaatgtttttattgatacatatttcttggtgtttgattaatgatgaattttataactatacataaatgacacaattagacaa |
41566606 |
T |
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| Q |
215 |
attcaatcttatgtatatataatgtgcataaattttaagaagaaatattatgatgatgaaat |
276 |
Q |
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| T |
41566605 |
attcaatcgtatgtatatataatgtgcataaactttaagaagaaatattatgatgatgaaat |
41566544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 41434885 - 41435037
Alignment:
| Q |
15 |
caaaggggtgtggtaactttactaaagtacaagaagctgttaatgctgttccggactgatcaagttctcatgccacccttatcatactcaattctggaac |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
41434885 |
caaaggggtgtggtaactttacta--gtacaagaagctgttaatgctgttccggactcat---gttctcatgccacccttatcatactcaattctggaac |
41434979 |
T |
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| Q |
115 |
atacaggttatcttcctttaatgtttttattgatacatatttcttggtgtttgattaat |
173 |
Q |
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| T |
41434980 |
atacaggttatctt-ctcttatgtttttattgatacatattacttggtatttgattaat |
41435037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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