View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_high_41 (Length: 251)

Name: NF15777_high_41
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_high_41
NF15777_high_41
[»] chr6 (14 HSPs)
chr6 (44-156)||(26146908-26147020)
chr6 (31-156)||(26062797-26062923)
chr6 (31-156)||(26082766-26082892)
chr6 (36-156)||(25489128-25489249)
chr6 (59-156)||(25548736-25548833)
chr6 (31-156)||(25453222-25453347)
chr6 (36-156)||(24771413-24771533)
chr6 (181-239)||(26059531-26059589)
chr6 (181-239)||(26079501-26079559)
chr6 (181-226)||(25486908-25486953)
chr6 (181-226)||(26146506-26146551)
chr6 (186-229)||(27703330-27703373)
chr6 (181-213)||(25583205-25583237)
chr6 (195-227)||(26962728-26962760)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 26147020 - 26146908
Alignment:
Q  44 ataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttgactttgat 143  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26147020 ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat 26146921  T
Q  144 aaaaactagaata 156  Q
    |||||| ||||||    
T  26146920 aaaaaccagaata 26146908  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 26062923 - 26062797
Alignment:
Q  31 ccatccttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaa-aaaattgaggaaagcttttgtcaatt 129  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  26062923 ccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaatt 26062824  T
Q  130 catttgactttgataaaaactagaata 156  Q
    |||||||||  ||||||||| ||||||    
T  26062823 catttgactcagataaaaaccagaata 26062797  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 26082892 - 26082766
Alignment:
Q  31 ccatccttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaa-aaaattgaggaaagcttttgtcaatt 129  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  26082892 ccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaatt 26082793  T
Q  130 catttgactttgataaaaactagaata 156  Q
    |||||||||  ||||||||| ||||||    
T  26082792 catttgactcagataaaaaccagaata 26082766  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 25489249 - 25489128
Alignment:
Q  36 cttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaa-aaaattgaggaaagcttttgtcaattcattt 134  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  25489249 cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt 25489150  T
Q  135 gactttgataaaaactagaata 156  Q
    ||||  ||||||||| ||||||    
T  25489149 gactcagataaaaaccagaata 25489128  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 25548833 - 25548736
Alignment:
Q  59 attccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttgactttgataaaaactagaata 156  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25548833 attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaata 25548736  T

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Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 25453347 - 25453222
Alignment:
Q  31 ccatccttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattc 130  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||    
T  25453347 ccattcttcccatataggactctaccaaattccagatggattggatattgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattc 25453248  T
Q  131 atttgactttgataaaaactagaata 156  Q
    ||||||||  ||||||||| ||||||    
T  25453247 atttgactcagataaaaaccagaata 25453222  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 24771533 - 24771413
Alignment:
Q  36 cttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttg 135  Q
    |||||||||||||| | ||||||| |||| |||||||| || |||||| |||||| | |||||||  ||||||||||||||||||||||||||||| |||    
T  24771533 cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg 24771434  T
Q  136 actttgataaaaactagaata 156  Q
    |   |||||||||| ||||||    
T  24771433 atgctgataaaaaccagaata 24771413  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 26059589 - 26059531
Alignment:
Q  181 atctctctttcatcttgtgcactgcttaatatttcaatctcatccccatctgtgctgct 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26059589 atctttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgct 26059531  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 26079559 - 26079501
Alignment:
Q  181 atctctctttcatcttgtgcactgcttaatatttcaatctcatccccatctgtgctgct 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26079559 atctttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgct 26079501  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 25486953 - 25486908
Alignment:
Q  181 atctctctttcatcttgtgcactgcttaatatttcaatctcatccc 226  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  25486953 atctttctttcatcttgcgcactgcttaatatttcaatctcatccc 25486908  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 26146551 - 26146506
Alignment:
Q  181 atctctctttcatcttgtgcactgcttaatatttcaatctcatccc 226  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  26146551 atctttctttcatcttgcgcactgcttaatatttcaatctcatccc 26146506  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 27703330 - 27703373
Alignment:
Q  186 tctttcatcttgtgcactgcttaatatttcaatctcatccccat 229  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  27703330 tctttcatcttgtgcattgtttaaaatttcaatctcatccccat 27703373  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 25583237 - 25583205
Alignment:
Q  181 atctctctttcatcttgtgcactgcttaatatt 213  Q
    |||| ||||||||||||||||||||||||||||    
T  25583237 atctttctttcatcttgtgcactgcttaatatt 25583205  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 26962760 - 26962728
Alignment:
Q  195 ttgtgcactgcttaatatttcaatctcatcccc 227  Q
    |||||||||||||||||||||| ||||||||||    
T  26962760 ttgtgcactgcttaatatttcagtctcatcccc 26962728  T

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