View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_high_48 (Length: 236)
Name: NF15777_high_48
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_48 |
 | |
|
| [»] chr6 (16 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26059561 - 26059794
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26059561 |
ttaagcagtgcacaagatgaaagaaagatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
26059660 |
T |
|
| Q |
101 |
ttgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaagttt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26059661 |
ttgcaggtttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagt--cagttacaaattcaatgtttctagttggagaagttt |
26059758 |
T |
|
| Q |
201 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26059759 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
26059794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26079531 - 26079764
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26079531 |
ttaagcagtgcacaagatgaaagaaagatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
26079630 |
T |
|
| Q |
101 |
ttgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaagttt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
26079631 |
ttgcaggtttgtgctttgatgtttatactttgtataaatgttgattaatttctgtatgtagt--cagttacaaattcaatgtttctagttggagaagttt |
26079728 |
T |
|
| Q |
201 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26079729 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
26079764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 25486925 - 25487145
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25486925 |
ttaagcagtgcgcaagatgaaagaaagatgttgggtacattccttagtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
25487024 |
T |
|
| Q |
101 |
ttgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaagttt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25487025 |
ttgcaggtttgtgcttt-----------gttgtataaatgttga--aatttctgtatatagt--cagttacaaattcaatgtttctagttggagaagttt |
25487109 |
T |
|
| Q |
201 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25487110 |
cttaaaccatgagacatgatgtaagtttctgtgtgt |
25487145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26146523 - 26146698
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146523 |
ttaagcagtgcgcaagatgaaagaaagatgttgggtacattccttagtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
26146622 |
T |
|
| Q |
101 |
ttgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattca |
178 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26146623 |
ttgcaggtttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagt--cagttacaaattca |
26146698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 25514427 - 25514538
Alignment:
| Q |
65 |
gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtca |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25514427 |
gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtatatactttgtataaatgttgattaatttctgtatatagt-- |
25514524 |
T |
|
| Q |
165 |
cagttacaaattca |
178 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25514525 |
cagttacaaattca |
25514538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 27662043 - 27661808
Alignment:
| Q |
12 |
acaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttg |
111 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| || |||| | |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
27662043 |
acaagatgaaagaaatatgtggggtacattccttgatccaggtgcgccataaagttaaccgtcttgttgttatcctctcaatctcaactttgcaggtttg |
27661944 |
T |
|
| Q |
112 |
tgcttttctgt---------------ttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaa |
196 |
Q |
| |
|
|||||| |||| |||| || ||||||| |||||||||||||||||||||| || ||||||||||| ||||| | | ||||||| |
|
|
| T |
27661943 |
tgctttactgtttacagttgaaatcattatcattattataaatattgattaatttctgtatatagt--caattacaaattcattgtttatagatggagaa |
27661846 |
T |
|
| Q |
197 |
gtttcttaaaccatgagacatgatgtaagtttctgtgt |
234 |
Q |
| |
|
||| |||||| |||||||||||||||||| || ||||| |
|
|
| T |
27661845 |
gttgcttaaatcatgagacatgatgtaagattatgtgt |
27661808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 25986741 - 25986842
Alignment:
| Q |
51 |
aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25986741 |
aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttt-----------gttgtataaatgttgattaatt |
25986829 |
T |
|
| Q |
151 |
tctgtatatagtc |
163 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25986830 |
tctgtatatagtc |
25986842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 27423979 - 27423901
Alignment:
| Q |
24 |
aaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
27423979 |
aaagatgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt |
27423901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 27703353 - 27703182
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaaca |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27703353 |
ttaaacaatgcacaagatgaaagaatgatgtggggtacattccttggtctagctccatcataaagttaa----------------ctctcaatctcaaca |
27703270 |
T |
|
| Q |
101 |
ttgcaggtttgtgcttttctgtttatactttgtataaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaagtt |
199 |
Q |
| |
|
||| ||||||||| ||||||||| || ||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||| |
|
|
| T |
27703269 |
ttggaggtttgtgattttctgtt---------tacaaatgttgattaatttctgtatatagt--caattacaaattcgttgtttctagttggagaagtt |
27703182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 27079018 - 27079130
Alignment:
| Q |
19 |
gaaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttt |
118 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||| ||| || | |||| || |||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27079018 |
gaaagaaagacatggggtacattcctttgtctaggtgcattatgaggttagccatcttgttgttattctctcaatctcaacattgaaggtttgtgctttg |
27079117 |
T |
|
| Q |
119 |
ctgtttatacttt |
131 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
27079118 |
ctgtttacacttt |
27079130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 25077802 - 25077925
Alignment:
| Q |
37 |
acattccttggtcta-ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgtttatactttgtat |
135 |
Q |
| |
|
|||||||||||| || ||| |||| |||||||||||||||| ||||| || ||| |||| |||||||||||||||||| ||| |||||| ||||| ||| |
|
|
| T |
25077802 |
acattccttggtttaaggtgcatcgtaaagttaaccgtcttgttgttgtt-tcttaatcacaacattgcaggtttgtgttttgttgtttacactttatat |
25077900 |
T |
|
| Q |
136 |
aaatg-ttgattaatttctgtatat |
159 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
25077901 |
aaacgtttgattaatttctgtatat |
25077925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25583209 - 25583263
Alignment:
| Q |
1 |
ttaagcaatgcacaagatgaaagaaagatgttgggtacattccttggtctaggtc |
55 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25583209 |
ttaagcagtgcacaagatgaaagaaagatgttgggtacattccttggtttaggtc |
25583263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 27715092 - 27715029
Alignment:
| Q |
62 |
aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgttta |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
27715092 |
aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgctgttta |
27715029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 26852473 - 26852557
Alignment:
| Q |
136 |
aaatgttgattaatttctgtatatagtcacagttacaaattcaatgtttcttgttggagaagtttcttaaaccatgagacatgatgt |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||| ||||||| ||||||||||||| | ||| |||||||||||||| |
|
|
| T |
26852473 |
aaatgttgattaatttctgtatatagt--caattgcaaattcgttgtttctagttggagaagtttttcaaatgatgagacatgatgt |
26852557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 31288184 - 31288239
Alignment:
| Q |
70 |
ccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgttta |
125 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
31288184 |
ccgtcttgttgttattctcttgatctcaactttgcaggtttgtggtttgctgttta |
31288239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 26852408 - 26852453
Alignment:
| Q |
86 |
ctctcaatctcaacattgcaggtttgtgcttttctgtttatacttt |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||| ||||| |
|
|
| T |
26852408 |
ctctcaatctcaacattggaggtttgtggtttgctgtttacacttt |
26852453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 63384 - 63462
Alignment:
| Q |
24 |
aaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
63384 |
aaagatgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt |
63462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 29270398 - 29270329
Alignment:
| Q |
20 |
aaagaaagatgttgggtacattccttggtctaggtccatcataaagttaaccgtcttcttgttattctct |
89 |
Q |
| |
|
||||||||| | |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29270398 |
aaagaaagacatggggtacataccttagtctaggtccattataaagttaaccgtcttcttgttattctct |
29270329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 16852 - 16915
Alignment:
| Q |
62 |
aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgcttttctgttta |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
16852 |
aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgctgttta |
16915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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