View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_high_51 (Length: 211)
Name: NF15777_high_51
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40028969 - 40029168
Alignment:
| Q |
1 |
atatgattaagaaataaacacaagtcgacact--atctagtgcagctcccacgagaacgccttaatcttcaagggaacctaaaacttccgaacaagcaaa |
98 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||| |||||| |||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
40028969 |
atataattaaaaaattgacacaagtcgacactctatctagagcagctgtcacgagaacgccttaactttcaggggagcctaaaacttccgaacaagcaaa |
40029068 |
T |
|
| Q |
99 |
agtagggaacgtccctcaaaagggaaccgttcactagaaacacccctcataagaagcattagatatattggtgtaacaaagtaaacatctttatattctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40029069 |
agtagggaacgtccctcaaaagggaacccttcactagaaacacccctcataagaagcattagatatgttggtgtaacaaagtaaacatctttatattctt |
40029168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University