View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_high_52 (Length: 207)
Name: NF15777_high_52
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 10337323 - 10337144
Alignment:
| Q |
16 |
tgaagccaccacatatttcatttgaataaaagccatttcttttccaagacacacccttggaccagcctgaaaaataggaaacttataaggacaaacctca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337323 |
tgaagccaccacatatttcatttgaataaaagccatttcttttccaagacacacccttggaccagcctgaaaaataggaaacttataaggacaaacctca |
10337224 |
T |
|
| Q |
116 |
ctcaatattatttcattgttcaattcaacaaaccaacgatctggtctaaattcaaaccaatcttttccccataaattttc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337223 |
ctcaatattatttcattgttcaattcaacaaaccaacgatctggtctaaattcaaaccaatcttttccccataaattttc |
10337144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 36464748 - 36464675
Alignment:
| Q |
16 |
tgaagccaccacatatttcatttgaataaaagccatttcttttccaagacacacccttggaccagcctgaaaaa |
89 |
Q |
| |
|
||||||||| || |||| |||||||||||||||||| ||||| |||||||| || |||||||| |||||||||| |
|
|
| T |
36464748 |
tgaagccacaacgtattccatttgaataaaagccatgtctttcccaagacaaactcttggaccggcctgaaaaa |
36464675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University