View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_high_6 (Length: 683)

Name: NF15777_high_6
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_high_6
NF15777_high_6
[»] chr3 (17 HSPs)
chr3 (377-673)||(925583-925879)
chr3 (377-673)||(44702973-44703269)
chr3 (377-543)||(24758985-24759151)
chr3 (377-543)||(24826863-24827029)
chr3 (378-512)||(33648375-33648509)
chr3 (377-543)||(37984709-37984875)
chr3 (377-543)||(53024890-53025056)
chr3 (421-529)||(13364198-13364306)
chr3 (419-503)||(21037162-21037246)
chr3 (421-572)||(46921626-46921775)
chr3 (377-548)||(18986333-18986504)
chr3 (377-543)||(17689293-17689459)
chr3 (377-543)||(31687494-31687660)
chr3 (403-512)||(20370786-20370895)
chr3 (403-467)||(46590842-46590906)
chr3 (419-503)||(46832494-46832578)
chr3 (424-512)||(36155457-36155545)
[»] chr4 (4 HSPs)
chr4 (21-371)||(5453029-5453378)
chr4 (377-673)||(5454071-5454367)
chr4 (425-529)||(30176365-30176469)
chr4 (388-449)||(27707845-27707906)
[»] chr5 (6 HSPs)
chr5 (377-673)||(43026466-43026762)
chr5 (377-543)||(30442893-30443059)
chr5 (421-543)||(22003049-22003171)
chr5 (403-509)||(37714174-37714280)
chr5 (421-488)||(7472560-7472627)
chr5 (423-484)||(9463572-9463633)
[»] scaffold0007 (1 HSPs)
scaffold0007 (421-573)||(79276-79428)
[»] chr7 (12 HSPs)
chr7 (377-543)||(14231836-14232002)
chr7 (385-507)||(11002996-11003118)
chr7 (377-543)||(26906764-26906930)
chr7 (419-510)||(44117826-44117917)
chr7 (377-543)||(1264560-1264726)
chr7 (434-532)||(21314400-21314498)
chr7 (378-543)||(48847212-48847377)
chr7 (388-512)||(34577192-34577316)
chr7 (413-512)||(22368168-22368267)
chr7 (377-455)||(30068107-30068185)
chr7 (434-512)||(40674471-40674549)
chr7 (377-455)||(45137779-45137857)
[»] chr6 (10 HSPs)
chr6 (377-485)||(22390029-22390137)
chr6 (377-485)||(30775426-30775534)
chr6 (454-544)||(26533381-26533471)
chr6 (441-563)||(9853274-9853395)
chr6 (377-543)||(31891479-31891645)
chr6 (421-572)||(32263099-32263251)
chr6 (403-509)||(4439956-4440062)
chr6 (388-449)||(2736627-2736688)
chr6 (403-467)||(4095981-4096045)
chr6 (378-489)||(21999415-21999526)
[»] chr1 (3 HSPs)
chr1 (377-543)||(25226606-25226773)
chr1 (424-512)||(47742018-47742106)
chr1 (424-473)||(38685384-38685433)
[»] chr8 (5 HSPs)
chr8 (377-563)||(18850850-18851031)
chr8 (421-572)||(35615191-35615341)
chr8 (379-561)||(43382483-43382665)
chr8 (421-512)||(16804720-16804811)
chr8 (421-542)||(31378870-31378991)
[»] chr2 (1 HSPs)
chr2 (421-488)||(12742644-12742711)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 377 - 673
Target Start/End: Original strand, 925583 - 925879
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  925583 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcat 925682  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 576  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  925683 ttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaaaac 925782  T
Q  577 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925783 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 925879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 377 - 673
Target Start/End: Complemental strand, 44703269 - 44702973
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44703269 gaattccttttaaatttcaacgtcgacaattccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacat 44703170  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||  ||    
T  44703169 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaatggctgaatattttgctgttggatgaacac 44703070  T
Q  577 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 673  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| |||||| ||||||    
T  44703069 ggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggttagttaatttcactctgtttatttatttgttctatttcat 44702973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 377 - 543
Target Start/End: Complemental strand, 24759151 - 24758985
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24759151 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24759052  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24759051 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24758985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 24826863 - 24827029
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24826863 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24826962  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24826963 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 378 - 512
Target Start/End: Complemental strand, 33648509 - 33648375
Alignment:
Q  378 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 477  Q
    ||||||||| |||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||     
T  33648509 aattcctttcaaatttcaacgtagtcagtttcctatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacatc 33648410  T
Q  478 taccttccacaaccagtattctctcatggtcaact 512  Q
    || ||||||||| | || ||||| ||||| |||||    
T  33648409 tatcttccacaatcggtcttctcacatggacaact 33648375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 37984709 - 37984875
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  37984709 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 37984808  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | ||  |||| ||||| || || || || || |||||| | ||||||||||||    
T  37984809 ctatcttccacaatcggtcgtctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 37984875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 543
Target Start/End: Complemental strand, 53025056 - 53024890
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||  | || || ||||||||| | |||||| ||||||| || |||||||||||||| || ||||| || || |||| |||    
T  53025056 gaattcctttcaaatttcaacgcagacaatttcctatatctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttgacat 53024957  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  53024956 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcacgtgttacatcaagg 53024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 421 - 529
Target Start/End: Complemental strand, 13364306 - 13364198
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    |||||||||||||  || ||||||||||| ||||||||||| ||||| |||| ||| || |||||| |  || | ||||| |||||||||||||| ||||    
T  13364306 tgttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtag 13364207  T
Q  521 ccatatcaa 529  Q
    | |||||||    
T  13364206 caatatcaa 13364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 419 - 503
Target Start/End: Complemental strand, 21037246 - 21037162
Alignment:
Q  419 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 503  Q
    ||||||||||||||||||| ||||||| |||||| || ||| | ||||| |||||||| ||||| |||||| | |||||||||||    
T  21037246 tttgttttgcaatgaccattaacaaaactcagggtcaatcattaaaacaagttggcatctacctaccacaatctgtattctctca 21037162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 421 - 572
Target Start/End: Complemental strand, 46921775 - 46921626
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    ||||||||||||||||||||| ||||| | ||||||||||| || ||| |||| || ||||||| |||    || ||||   |||||||||| || ||||    
T  46921775 tgttttgcaatgaccatcaactaaagttaagggcagtcactaaatcagattggtatataccttctaca--ttgtgttcttaaatggtcaactttatgtag 46921678  T
Q  521 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 572  Q
    | |||||||||||| | ||||| || ||  ||||||||||||| ||||||||    
T  46921677 caatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga 46921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 548
Target Start/End: Complemental strand, 18986504 - 18986333
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||  |||  ||||||||||| |||||||||||||| ||||| ||| | ||| | |||||  |    
T  18986504 gaattccatttaagtttcagcgtcgacagttccctatatcggtttcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagt 18986405  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagg 548  Q
     |||||||| ||||| || || || || || ||||| || || ||  | ||||| ||||||||||| |||||    
T  18986404 ataccttcctcaaccggttttttcccacggacaactatatgttgcggtgtcaagagttacatcaagaaaagg 18986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 17689293 - 17689459
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||| ||| |||||||||||  | |||||  ||||| || | ||||||||||||||||| |||||||||||||| || ||||| || || ||||| ||    
T  17689293 gaattcgtttcaaatttcaacgcagacagtttactatagctttgtgttttgcaatgaccataaacaaaagtcagggacaatcacttaagcaagttgggat 17689392  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| || || || || || ||||||   ||||||||||||    
T  17689393 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacatgttacatcaagg 17689459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 31687494 - 31687660
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||  | |||||  ||||| || | ||||||||||| || || |||||||||||||| |  ||||| || || |||| |||    
T  31687494 gaattcctttcaaatttcaacgcagacagttttctatagctttgtgttttgcaatcactataaacaaaagtcagggacgatcacttaagcaagttgacat 31687593  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| |||| ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31687594 ctatcttccacaatcagtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 512
Target Start/End: Complemental strand, 20370895 - 20370786
Alignment:
Q  403 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 502  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| ||||| || |||||||    
T  20370895 cagtttcctatatctgtttgttttgcaatgacaatcaacaagagtcaaggacaatcattgaaagaagttgctgtctaccttcctcaacccgtgttctctc 20370796  T
Q  503 atggtcaact 512  Q
    ||||||||||    
T  20370795 atggtcaact 20370786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 46590906 - 46590842
Alignment:
Q  403 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 467  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  46590906 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 46590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 503
Target Start/End: Complemental strand, 46832578 - 46832494
Alignment:
Q  419 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 503  Q
    |||||||||| |||||||| |||||| ||||  | || ||||| |||||||||||||| ||||| |||||| || | ||||||||    
T  46832578 tttgttttgctatgaccattaacaaacgtcaatgtcaatcactaaaacaggttggcatctacctaccacaatcaatcttctctca 46832494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 36155457 - 36155545
Alignment:
Q  424 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 512  Q
    ||||||||||| || ||||||||||| || ||||| ||||| || |||||  | || || ||||||||  | |||||||||||||||||    
T  36155457 tttgcaatgactattaacaaaagtcaaggtcagtctctcaagcaagttggtgtatatctcccacaacctatgttctctcatggtcaact 36155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 5453029 - 5453378
Alignment:
Q  21 tcatcactaccgaaaaataattagaaccacccttcttaacacaatacaatctactcaaatcaaaatggcccctataaccacacctattgccgccatttta 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5453029 tcatcactaccgaaaaataattagaaccagccttcttaacacaatacaatctactcaaatcaaaatggcccctataaccacacctattgccgccatttta 5453128  T
Q  121 gcagggaagattaacattaagatccactgtcgcgtaatccacatgtggacagttcctgattacaacaatccgactgaagacggttgcatgcacatgttgc 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5453129 gcagggaagattaacattaagatccactgtcgcgtcatccacatgtggacagttcctgattacaacaatccgaatgaagacggttgcatgcacatgttgc 5453228  T
Q  221 tacttgatgaaaaggtacattagttagtttcctaccatgataagttgnnnnnnnncacatgttatagctttacatttctttggttctattgtataacttt 320  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||        |||||||||||||||||||||| |||||||| |||||||||||||    
T  5453229 tacttgatgaaaaggtacattagttagtttcctaccagcataagttg-tttttttcacatgttatagctttacatttatttggttcaattgtataacttt 5453327  T
Q  321 gccagcgttcttcttaaacagaatgggaggattcaggcatctgcaagaaaa 371  Q
    | ||||||  |||||||||| || |||| ||||||||||||||||| ||||    
T  5453328 gtcagcgtgtttcttaaacaaaaagggaagattcaggcatctgcaaaaaaa 5453378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 377 - 673
Target Start/End: Original strand, 5454071 - 5454367
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454071 gaattccttttaaatttcaacgccgacagttccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 5454170  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 576  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||| |||||  ||    
T  5454171 ttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggttacatcaaggaaaggacttaaaattttgttgttggatgaacac 5454270  T
Q  577 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 673  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  5454271 ggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgtttagttaatttcactctgtttatttatctgttctgtttcat 5454367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 30176469 - 30176365
Alignment:
Q  425 ttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccat 524  Q
    |||||||||| || |||||||||||  | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || ||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgat 30176370  T
Q  525 atcaa 529  Q
    |||||    
T  30176369 atcaa 30176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 27707906 - 27707845
Alignment:
Q  388 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 449  Q
    ||||| |||||| | ||||| |||||||||| ||||||||||||||| ||||| || |||||    
T  27707906 aaattccaacgtaggcagtttcctatatctacttgttttgcaatgacaatcaataagagtca 27707845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 377 - 673
Target Start/End: Complemental strand, 43026762 - 43026466
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  43026762 gaattccttttaaatttcaacgtcgacagttccctatatttgtttgttttgcaatgaacattaacaaaagtcaggggcagtcactcaagcaggttggcat 43026663  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 576  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43026662 ttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaacac 43026563  T
Q  577 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||    
T  43026562 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagttaatttcactctgtttatttatctgttatgtttcat 43026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 543
Target Start/End: Complemental strand, 30443059 - 30442893
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| ||  | ||||||||    
T  30443059 gaattcctttcaaatttcaacgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagtaagttggcat 30442960  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  30442959 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 30442893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 543
Target Start/End: Complemental strand, 22003171 - 22003049
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    |||||||||||||| || ||||||||||| || || ||||| || || |||||||| || ||||||||| | || ||||| ||||| || || || || |    
T  22003171 tgttttgcaatgactataaacaaaagtcaaggacaatcacttaagcaagttggcatctatcttccacaatcggtcttctcacatggacagctatatgttg 22003072  T
Q  521 ccatatcaagggttacatcaagg 543  Q
    | |||||| | ||||||||||||    
T  22003071 caatatcacgcgttacatcaagg 22003049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 509
Target Start/End: Complemental strand, 37714280 - 37714174
Alignment:
Q  403 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 502  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  37714280 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcatggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 37714181  T
Q  503 atggtca 509  Q
    |||||||    
T  37714180 atggtca 37714174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 488
Target Start/End: Complemental strand, 7472627 - 7472560
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 488  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  7472627 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 7472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 9463572 - 9463633
Alignment:
Q  423 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 484  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||| ||| |||||||    
T  9463572 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttgacatataccttc 9463633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 421 - 573
Target Start/End: Complemental strand, 79428 - 79276
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| ||||  ||||||||||| || ||||    
T  79428 tgttttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtag 79329  T
Q  521 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgat 573  Q
    | |||||| | ||||| |||||||| || |||||||||| |||  ||||||||    
T  79328 caatatcaggagttacttcaaggaatggtctgaaaatttcgctaatagatgat 79276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 14231836 - 14232002
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  14231836 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 14231935  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  14231936 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 14232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 507
Target Start/End: Complemental strand, 11003118 - 11002996
Alignment:
Q  385 tttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 484  Q
    ||||||||||||||| | ||||| ||| ||||  | |||||||||||||| |||||||| ||||| || || |||||||||||  ||||  | |||||||    
T  11003118 tttaaatttcaacgtaggcagtttcctctatcagtatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaaattggtgtgtaccttc 11003019  T
Q  485 cacaaccagtattctctcatggt 507  Q
    | ||||| |||||||||||||||    
T  11003018 ctcaacccgtattctctcatggt 11002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 543
Target Start/End: Complemental strand, 26906930 - 26906764
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || || ||||||||||| || ||||| || || ||| ||||    
T  26906930 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaataaaagtcagggacaatcacttaagcaagttagcat 26906831  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  26906830 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 26906764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 44117826 - 44117917
Alignment:
Q  419 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaa 510  Q
    ||||||||||||||||||| |||||||| || ||||| ||| | ||| | |||||||| ||||| |||||| | |||||||| || ||||||    
T  44117826 tttgttttgcaatgaccattaacaaaagccaagggcaatcattaaaataagttggcatctacctaccacaatctgtattctcccacggtcaa 44117917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 1264560 - 1264726
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |    
T  1264560 gaattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggctt 1264659  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  1264660 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 1264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 532
Target Start/End: Complemental strand, 21314498 - 21314400
Alignment:
Q  434 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 532  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||    
T  21314498 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg 21314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 543
Target Start/End: Complemental strand, 48847377 - 48847212
Alignment:
Q  378 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 477  Q
    ||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |     
T  48847377 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcttc 48847278  T
Q  478 taccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
    || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  48847277 tatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 48847212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 512
Target Start/End: Original strand, 34577192 - 34577316
Alignment:
Q  388 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccac 487  Q
    ||||| |||||| | ||||| ||||||||| ||| |||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| |    
T  34577192 aaattccaacgtaggcagtttcctatatctgtttattttgcaatgacaatcaacaagagtcaaggacaatcattaaaagaagttgatgtctaccttcctc 34577291  T
Q  488 aaccagtattctctcatggtcaact 512  Q
    |||  || |||||||||||||||||    
T  34577292 aactcgtgttctctcatggtcaact 34577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 22368168 - 22368267
Alignment:
Q  413 tatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 512  Q
    ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||||||| ||||    
T  22368168 tatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctcatggtaaact 22368267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 30068107 - 30068185
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 455  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  30068107 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 30068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 512
Target Start/End: Complemental strand, 40674549 - 40674471
Alignment:
Q  434 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 512  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||||||| | ||||| |||||||||||    
T  40674549 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact 40674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 45137779 - 45137857
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 455  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  45137779 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 45137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 377 - 485
Target Start/End: Complemental strand, 22390137 - 22390029
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||| ||||||||||||||||||| |||||| |||||| | | | |||||| |||||||| || |||||||| || |||||||| ||| | ||||||||    
T  22390137 gaatttcttttaaatttcaacgtcgacagttcgctatatttgtatcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcat 22390038  T
Q  477 ttaccttcc 485  Q
     ||||||||    
T  22390037 ataccttcc 22390029  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 377 - 485
Target Start/End: Original strand, 30775426 - 30775534
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||||||||| |||||  |  |||| ||||||  | ||||||||||||||| ||||||||||| ||| |||||||||||||| || ||||||||    
T  30775426 gaattccttttaaattccaacgctgagagtttcctatagatgtttgttttgcaatgatcatcaacaaaaatcaagggcagtcactcaagcaagttggcat 30775525  T
Q  477 ttaccttcc 485  Q
     || |||||    
T  30775526 atatcttcc 30775534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 454 - 544
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
Q  454 cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga 544  Q
    |||||||||||||| |||||  | ||||||| |||||| |||||||||||||||||||  || || || ||||||||||||| ||||||||    
T  26533381 cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga 26533471  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 563
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
Q  441 caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca 540  Q
    ||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| ||||  ||||| || ||||| ||||| || ||||| |||    
T  9853274 caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca 9853372  T
Q  541 aggaaagggctgaaaattttgct 563  Q
    ||| | || ||||||||||||||    
T  9853373 agggatggcctgaaaattttgct 9853395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 543
Target Start/End: Complemental strand, 31891645 - 31891479
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    |||||||||| |||||||| ||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || | ||||||    
T  31891645 gaattcctttcaaatttcaccgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaaggtggcat 31891546  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31891545 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31891479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 572
Target Start/End: Original strand, 32263099 - 32263251
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgta 519  Q
    ||||||| |||||| || ||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || |||    
T  32263099 tgttttgtaatgactattaacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgta 32263198  T
Q  520 gccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 572  Q
    || |||||||| ||||| |||| ||  ||  |||||||||||||  |||||||    
T  32263199 gcaatatcaagagttacttcaatgagtggtttgaaaattttgctaatagatga 32263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 4439956 - 4440062
Alignment:
Q  403 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 502  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  4439956 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 4440055  T
Q  503 atggtca 509  Q
    |||||||    
T  4440056 atggtca 4440062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 2736627 - 2736688
Alignment:
Q  388 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 449  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  2736627 aaattccaacgtaggcagtttcctatatctgtttgttttgcaatgacaatcaacaagagtca 2736688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 4095981 - 4096045
Alignment:
Q  403 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 467  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  4095981 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 4096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 21999526 - 21999415
Alignment:
Q  378 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 477  Q
    ||||||||| |||||||||||  | || || |||||| || | |||||| ||||||| || |||||||||||||| || ||||| || || ||| ||||     
T  21999526 aattcctttcaaatttcaacgcagacaatttcctatagctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttagcatc 21999427  T
Q  478 taccttccacaa 489  Q
    || |||||||||    
T  21999426 tatcttccacaa 21999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 543
Target Start/End: Original strand, 25226606 - 25226773
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccat-caacaaaagtcaggggcagtcactcaaacaggttggca 475  Q
    |||||||||| |||||||||||| | ||||| |||||| || | |||||||||||||| ||  || ||||||||||| || ||||| || || |||||||    
T  25226606 gaattcctttcaaatttcaacgtagacagtttcctatagctttgtgttttgcaatgactataaaaaaaaagtcagggacaatcacttaagcaagttggca 25226705  T
Q  476 tttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 543  Q
    | || ||||||||||| || ||||| ||||| ||  | || || || |||||| | ||||||||||||    
T  25226706 tctatcttccacaaccggtcttctcacatgggcagttatatgttgcaatatcacgtgttacatcaagg 25226773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 47742018 - 47742106
Alignment:
Q  424 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 512  Q
    ||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| ||||||||||||||||||||    
T  47742018 tttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtattctctcatggtcaact 47742106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 38685384 - 38685433
Alignment:
Q  424 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgg 473  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  38685384 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 38685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 563
Target Start/End: Complemental strand, 18851031 - 18850850
Alignment:
Q  377 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 476  Q
    ||||| |||||||||| ||| || | ||||| | ||||||| |  |||||||||||||||| ||||||||||| | | ||||||| ||||| ||||| ||    
T  18851031 gaatttcttttaaatt-caatgtagacagtttcatatatctgtgagttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtat 18850933  T
Q  477 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgct 563  Q
     ||||    ||||||||| || || ||||||||||| || ||||| |||||||||| ||| | ||| || || ||||||| ||||||    
T  18850932 atacc----acaaccagtgttgtcacatggtcaactttatgtagcaatatcaagggctacctaaagaaacggtctgaaaactttgct 18850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 572
Target Start/End: Original strand, 35615191 - 35615341
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    ||||||| |||||| || ||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || |  ||||||||||| || ||||    
T  35615191 tgttttgtaatgactattaacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtag 35615290  T
Q  521 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 572  Q
    | |||| ||| ||||| |||||||| || ||  ||||||||||  |||||||    
T  35615291 caatat-aagagttacttcaaggaatggtctagaaattttgctaatagatga 35615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 561
Target Start/End: Original strand, 43382483 - 43382665
Alignment:
Q  379 attccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcattt 478  Q
    ||||| |||||||| |||||||| ||||| ||| ||||  | |||||| | ||||| |||||||| ||||| || || ||||||||| | |||||  | |    
T  43382483 attccgtttaaattccaacgtcggcagtttcctctatcagtctgtttttctatgacaatcaacaagagtcaaggacaatcactcaaaaaagttggtgtgt 43382582  T
Q  479 accttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttg 561  Q
    || | || ||||| ||||||||||| |||||| | || || || ||||| || |||||||||||||  || ||||| ||||||    
T  43382583 acgtacctcaacccgtattctctcacggtcaagtttatgttgcaatatccagagttacatcaaggagtggtctgaagattttg 43382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 512
Target Start/End: Original strand, 16804720 - 16804811
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 512  Q
    |||||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| || |||||||||||||||||    
T  16804720 tgttttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtgttctctcatggtcaact 16804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 542
Target Start/End: Original strand, 31378870 - 31378991
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 520  Q
    |||||||||||||| ||||||||||| || || || |||||||| || || ||  |||| ||||||||||| || ||||| || ||||| || || || |    
T  31378870 tgttttgcaatgacaatcaacaaaagccaaggacaatcactcaagcaagtcggtgtttatcttccacaacccgtcttctcacacggtcagctttatgttg 31378969  T
Q  521 ccatatcaagggttacatcaag 542  Q
    |  |||| || |||||||||||    
T  31378970 cagtatccagagttacatcaag 31378991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 488
Target Start/End: Original strand, 12742644 - 12742711
Alignment:
Q  421 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 488  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  12742644 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 12742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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