View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_high_9 (Length: 605)
Name: NF15777_high_9
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Original strand, 33543296 - 33543817
Alignment:
| Q |
20 |
gttgacacttgatgtattccataaatcaagagatcaacttggagtttgtgaggtgctgccaaattaaattgaatgcatgcatgaatcagtttaggggagg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543296 |
gttgacacttgatgtattccataaatcaagagatcaacttagagtttctgaggtgctgccaaattaaattgaatgcatgcatgaatcagtttaggggagg |
33543395 |
T |
|
| Q |
120 |
aattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543396 |
aattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttg |
33543495 |
T |
|
| Q |
220 |
tatgattgagattaagcaatataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatgcatgcatgattgtttttactt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543496 |
tatgattgagattaagcaatataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatgcatgcatgattgtttttactt |
33543595 |
T |
|
| Q |
320 |
gttgttgaacaaaaactttgctttatataatgtggattatgaaattgaaactgaataaaactgcaagctttgtggattaaggtctaacaaagttagtttt |
419 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33543596 |
gttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaagttagtttt |
33543695 |
T |
|
| Q |
420 |
tccattccgtaaaacttttacaaatttaagatgtctttgacaggggaatgaggagatataaccaaaagggtctttgacatagattgatatg-----acca |
514 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33543696 |
tccattccgtaaaacttaaacaaatttaagatgtctttgacaggggaataaggagatataaccaaaagggtctttgacatagattgatatgatataacca |
33543795 |
T |
|
| Q |
515 |
agctcattacaatgtcgtcttt |
536 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33543796 |
agctcattacaatgtcgtcttt |
33543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 33361730 - 33361261
Alignment:
| Q |
17 |
accgttgacacttgatgtattccataaatcaagagatcaacttggagtttgtgaggtgctgccaaattaaattgaatgcatgcatgaatcagtttagggg |
116 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
33361730 |
accgttgacacttgatgtatttcataaatcaagagatcaacttggagtttgtgaggtgc--caaatttaaattgaatgcatgcatgaatcagtttagggg |
33361633 |
T |
|
| Q |
117 |
aggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttct |
216 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33361632 |
aggaattgttggaatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttct |
33361533 |
T |
|
| Q |
217 |
ttgtatgattgagattaagcaatataa---aataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatgcatgcatgattgttt |
313 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33361532 |
ttgtatgattgagattaagcaatataataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatgcatgcatgattgttt |
33361433 |
T |
|
| Q |
314 |
ttacttgttgttgaacaaaaactttgctttatataatgtggattatgaaattgaaactgaataaaactgcaagctttgtggattaaggtctaacaaagtt |
413 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33361432 |
ttacttgttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaagtt |
33361333 |
T |
|
| Q |
414 |
agtttttccattccgtaaaacttttacaaatttaagatgtctttgacaggggaatgaggagatataaccaaa |
485 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
33361332 |
agtttttccattccgtaaaactttaacaaatttaagatgtctttgacaggggaataaggagatatagccaaa |
33361261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 545 - 594
Target Start/End: Complemental strand, 33355783 - 33355734
Alignment:
| Q |
545 |
aatgttgtctttgtcgtactctacatccgccaccgctccacacctttcat |
594 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355783 |
aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttcat |
33355734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 33355836 - 33355772
Alignment:
| Q |
477 |
ataaccaaaagggtctttgacatagattgatatg-----accaagctcattacaatgtcgtcttt |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33355836 |
ataaccaaaagggtctttgacatagattgatatgatataaccaagctcattacaatgtcgtcttt |
33355772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 33543812 - 33543855
Alignment:
| Q |
551 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543812 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
33543855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 45345542 - 45345733
Alignment:
| Q |
17 |
accgttgacacttgatgtattccataaatcaagagatcaacttggagtttgtgaggtgctgccaaattaaattgaatgcatgcatgaatcagt------- |
109 |
Q |
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|||||||| ||||||||| ||||| |||| ||||||||| ||||||||||||||||||| | | ||||| ||||||||| ||||||||| |
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| T |
45345542 |
accgttgaaacttgatgtgttccaaaaattaagagatcagcttggagtttgtgaggtgc--caagtttaaactgaatgcatatgtgaatcagtgaatcaa |
45345639 |
T |
|
| Q |
110 |
-ttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaat |
202 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45345640 |
tttaggggaggaattgttaggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggttccaccaagtagaat |
45345733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 45341300 - 45341400
Alignment:
| Q |
121 |
attgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgt |
220 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||| |
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| T |
45341300 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgt |
45341399 |
T |
|
| Q |
221 |
a |
221 |
Q |
| |
|
| |
|
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| T |
45341400 |
a |
45341400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 28302770 - 28302671
Alignment:
| Q |
122 |
ttgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgta |
221 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28302770 |
ttgttcggatttattttaatgttactatttatttgggttcagttaataagttcttagtttctaggttccaccaagtagaattgcatttgttttctttgta |
28302671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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