View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_11 (Length: 564)

Name: NF15777_low_11
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_11
NF15777_low_11
[»] chr3 (16 HSPs)
chr3 (24-418)||(8647236-8647631)
chr3 (446-555)||(51976761-51976871)
chr3 (446-555)||(36684906-36685016)
chr3 (446-555)||(8705713-8705823)
chr3 (446-555)||(9057600-9057710)
chr3 (446-555)||(45736467-45736577)
chr3 (446-552)||(4978417-4978524)
chr3 (449-522)||(38998911-38998984)
chr3 (449-555)||(37796609-37796716)
chr3 (449-512)||(20916413-20916476)
chr3 (449-512)||(20925375-20925438)
chr3 (465-555)||(47165345-47165436)
chr3 (446-518)||(49758956-49759028)
chr3 (456-513)||(32073607-32073664)
chr3 (450-512)||(10346527-10346589)
chr3 (450-511)||(27265803-27265864)
[»] chr5 (7 HSPs)
chr5 (446-555)||(41197356-41197466)
chr5 (446-555)||(30376427-30376537)
chr5 (451-555)||(36779403-36779507)
chr5 (449-554)||(34905579-34905685)
chr5 (504-555)||(12378608-12378660)
chr5 (452-546)||(29985435-29985530)
chr5 (449-502)||(34525-34578)
[»] chr2 (4 HSPs)
chr2 (446-555)||(29894321-29894431)
chr2 (446-555)||(24543214-24543324)
chr2 (448-555)||(36365043-36365151)
chr2 (449-505)||(12555410-12555466)
[»] chr1 (15 HSPs)
chr1 (446-555)||(11351597-11351707)
chr1 (446-555)||(21515206-21515314)
chr1 (449-548)||(2536489-2536589)
chr1 (448-555)||(6784281-6784389)
chr1 (449-555)||(44839857-44839964)
chr1 (446-514)||(20639591-20639659)
chr1 (450-512)||(3601265-3601327)
chr1 (449-522)||(51080706-51080779)
chr1 (450-512)||(2114361-2114423)
chr1 (475-555)||(32988886-32988965)
chr1 (451-536)||(39648376-39648462)
chr1 (450-512)||(17321880-17321942)
chr1 (456-513)||(26418788-26418845)
chr1 (456-513)||(32108435-32108492)
chr1 (450-512)||(12539121-12539183)
[»] chr4 (13 HSPs)
chr4 (448-555)||(43989258-43989366)
chr4 (449-555)||(19315890-19315997)
chr4 (449-550)||(1394129-1394232)
chr4 (463-555)||(43813171-43813264)
chr4 (446-492)||(5124644-5124690)
chr4 (450-512)||(9633063-9633125)
chr4 (450-512)||(35096913-35096975)
chr4 (456-513)||(13200849-13200906)
chr4 (456-513)||(47783000-47783057)
chr4 (450-485)||(17283592-17283627)
chr4 (450-512)||(1479275-1479337)
chr4 (450-512)||(6969614-6969676)
chr4 (458-510)||(1311155-1311207)
[»] chr8 (5 HSPs)
chr8 (446-555)||(18481234-18481344)
chr8 (449-555)||(26440810-26440917)
chr8 (449-555)||(7251110-7251217)
chr8 (449-522)||(11911398-11911471)
chr8 (446-522)||(32536160-32536236)
[»] chr7 (8 HSPs)
chr7 (446-555)||(23820524-23820634)
chr7 (449-555)||(21118399-21118505)
chr7 (469-555)||(24808771-24808855)
chr7 (453-557)||(40901803-40901908)
chr7 (450-505)||(12980735-12980790)
chr7 (454-512)||(20492489-20492547)
chr7 (456-513)||(29526837-29526894)
chr7 (456-512)||(10325110-10325166)
[»] chr6 (6 HSPs)
chr6 (449-555)||(4513076-4513183)
chr6 (446-555)||(942694-942804)
chr6 (450-522)||(19047092-19047164)
chr6 (450-553)||(13757503-13757607)
chr6 (456-513)||(15950809-15950866)
chr6 (449-555)||(12125820-12125927)
[»] scaffold0041 (1 HSPs)
scaffold0041 (453-557)||(48110-48215)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 24 - 418
Target Start/End: Original strand, 8647236 - 8647631
Alignment:
Q  24 tacataaattacgcctaaaataaacgcttatttctaatggcattccaacttcacgctcttcaacttcacttcatcacatgatttcacctgcataaaaaga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  8647236 tacataaattacgcctaaaataaacgcttatttctaatggcattccaacttcatgctcttcaacttcacttcatcacatgatttcacctgcatataaaga 8647335  T
Q  124 --taaagaaaattaatcttactttcacttgctaataattacaaatttcatattcatgttaggaaacttttttgattcacacacaaatacattactatata 221  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8647336 gataaagaaaattaatcttactttcacttgctaataattacaaatttcatattcatgttaggaaacttttttgattcacacacaaatacattactatata 8647435  T
Q  222 tgtcatgtcataatcatgaagtccagtaatttattataagtcgtattttacacatttaagttaggacactagaagctactccttctgtattttattataa 321  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  8647436 tgtcatgtcataatcatgaagtccagaaatttattataagtcgtattttacacatttaagttgggacactagaagctactccttccgtattttattataa 8647535  T
Q  322 gtcgttttattttccaatatttgttgtatatggnnnnnnnngtttaaaacttgttatattcacaaatcacaatttagtgttaacatttaaaagaacc 418  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8647536 gtcgttttattttccaatatttgttgtatatgg-aaaaaaagtttaaaacttgttatattcacaattcacaatttagtgttaacatttaaaagaacc 8647631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 51976761 - 51976871
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51976761 taattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctccatctcatgctagctcccacgtt 51976860  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  51976861 tatgatgatgt 51976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 36684906 - 36685016
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  36684906 taattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatctcatgctagctctcacgtt 36685005  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  36685006 tatgatgatgt 36685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 8705713 - 8705823
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  8705713 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 8705812  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  8705813 tatgatgatgt 8705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 9057600 - 9057710
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  9057600 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 9057699  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  9057700 tatgatgatgt 9057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 45736467 - 45736577
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 544  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||| |  |||||   ||||||||||||||||| |||||||||||| ||||||||||    
T  45736467 taattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgctaactcccacgtt 45736566  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  45736567 tatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 446 - 552
Target Start/End: Complemental strand, 4978524 - 4978417
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||| |||| ||| |||||||||||||||| ||| ||||||||||| |||||| |||||||||||| ||| | | ||    
T  4978524 taattttcagaactctcatgtcgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctcatgctaactcgcgcatt 4978425  T
Q  545 tatgatga 552  Q
    ||||||||    
T  4978424 tatgatga 4978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 449 - 522
Target Start/End: Original strand, 38998911 - 38998984
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 522  Q
    |||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  38998911 ttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccc 38998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 37796609 - 37796716
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    |||||| ||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| || ||||| ||  | |||||    
T  37796609 ttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcacaaattagcgagggtagccccatctgatcctagccccaccatttat 37796708  T
Q  548 gatgatgt 555  Q
    ||||||||    
T  37796709 gatgatgt 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 20916413 - 20916476
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20916413 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20916476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 20925375 - 20925438
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20925375 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20925438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 555
Target Start/End: Complemental strand, 47165436 - 47165345
Alignment:
Q  465 gtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 555  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||  | || || ||||||||||||||||||||||||||| | ||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtttacggtgatgt 47165345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 49759028 - 49758956
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggta 518  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||| | ||||||| |||||  ||||||||    
T  49759028 taattttcagaactcttatgtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 32073664 - 32073607
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 10346589 - 10346527
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||  |||| |||||||| ||||||||||| |||  |||||||||||| ||||||    
T  10346589 tttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagct 10346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 27265803 - 27265864
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagc 511  Q
    ||||| |||||| |||| ||||| |||| ||| ||| | |||||||||||||||||||||||    
T  27265803 tttcaaaactctcatgttgagtttaataagagacaaactaatgaggtcgctcacgaattagc 27265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 446 - 555
Target Start/End: Complemental strand, 41197466 - 41197356
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41197466 taattttcagaactcttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 41197367  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  41197366 tatgatgatgt 41197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 446 - 555
Target Start/End: Complemental strand, 30376537 - 30376427
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 544  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||| ||||||||||||||||| |||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctcatgctagctccaacgtt 30376438  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  30376437 tatgatgatgt 30376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 555
Target Start/End: Complemental strand, 36779507 - 36779403
Alignment:
Q  451 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatga 549  Q
    ||||||||||| ||||||||| |||||||||||||||||||   ||| |||| | |||||||||||||| ||||||| ||| |||||||||||| |||||    
T  36779507 ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgttagctcccacgtctatga 36779409  T
Q  550 tgatgt 555  Q
    ||||||    
T  36779408 tgatgt 36779403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 554
Target Start/End: Original strand, 34905579 - 34905685
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttat 547  Q
    |||||||||||||  ||| |||||||||||||| ||| |||||||||||||||| ||||||||    ||||||| ||||||||||| |||||| |||||     
T  34905579 ttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcgctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttac 34905678  T
Q  548 gatgatg 554  Q
    |||||||    
T  34905679 gatgatg 34905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q  504 gaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 555  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 12378608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 546
Target Start/End: Original strand, 29985435 - 29985530
Alignment:
Q  452 tcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgttta 546  Q
    |||||||||| |||||||||||||||| || ||||| |||||||||| |||||| ||||||  |||||||| |  ||||| |||||||||| ||||    
T  29985435 tcagaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta 29985530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 502
Target Start/End: Original strand, 34525 - 34578
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctca 502  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||  |||||||||    
T  34525 ttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 446 - 555
Target Start/End: Complemental strand, 29894431 - 29894321
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29894431 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 29894332  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  29894331 tatgatgatgt 29894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 24543214 - 24543324
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  24543214 taattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 24543313  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  24543314 tatgatgatgt 24543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 448 - 555
Target Start/End: Original strand, 36365043 - 36365151
Alignment:
Q  448 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 546  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  36365043 attttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgttta 36365142  T
Q  547 tgatgatgt 555  Q
    || ||||||    
T  36365143 tggtgatgt 36365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 12555466 - 12555410
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 505  Q
    ||||||||||||| ||||| ||||||||||||||||||  |||| ||||||| ||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgcttacga 12555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 446 - 555
Target Start/End: Complemental strand, 11351707 - 11351597
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  11351707 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagcttccacgtt 11351608  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  11351607 tatgatgatgt 11351597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 21515206 - 21515314
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21515206 taattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 21515303  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  21515304 tatgatgatgt 21515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 449 - 548
Target Start/End: Complemental strand, 2536589 - 2536489
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtttat 2536490  T
Q  548 g 548  Q
    |    
T  2536489 g 2536489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 448 - 555
Target Start/End: Original strand, 6784281 - 6784389
Alignment:
Q  448 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgttta 546  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| ||||||||| |||||| |||||||||    
T  6784281 attttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctcatactagcttccacgttta 6784380  T
Q  547 tgatgatgt 555  Q
    |||| ||||    
T  6784381 tgataatgt 6784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 449 - 555
Target Start/End: Complemental strand, 44839964 - 44839857
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| || ||||||||||||| ||||||| ||||||||||| ||||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatctaatgctagctcctacgtttat 44839865  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  44839864 gataatgt 44839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 20639591 - 20639659
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctag 514  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20639591 taattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 3601327 - 3601265
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  3601327 tttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct 3601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 51080779 - 51080706
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 522  Q
    |||||| |||||| |||||||||| |||||||||||| | |||| ||||||||| |||||||| ||||||||||    
T  51080779 ttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccc 51080706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 2114361 - 2114423
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||||||||| |||| | |||| |||| |||||||||||||||||||    
T  2114361 tttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagct 2114423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 555
Target Start/End: Complemental strand, 32988965 - 32988886
Alignment:
Q  475 ataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 555  Q
    |||||||||||||||||    ||||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||    
T  32988965 ataggaggcaagccaattt--tcgctcatgaattagttagggtagccccatctcatgctagcttccgcgtttatgatgatgt 32988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 536
Target Start/End: Complemental strand, 39648462 - 39648376
Alignment:
Q  451 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagct 536  Q
    |||||||||||  ||||||||| ||||| || ||||| ||| |||||||||| |||||||||  ||||| |||||||||||||||||    
T  39648462 ttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgctagct 39648376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 17321880 - 17321942
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  ||| |||||||| ||||||    
T  17321880 tttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagct 17321942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 26418845 - 26418788
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 26418788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 32108435 - 32108492
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 12539121 - 12539183
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  | | |||||||| ||||||    
T  12539121 tttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagct 12539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 448 - 555
Target Start/End: Complemental strand, 43989366 - 43989258
Alignment:
Q  448 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 546  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  43989366 atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgttta 43989267  T
Q  547 tgatgatgt 555  Q
    |||||||||    
T  43989266 tgatgatgt 43989258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 555
Target Start/End: Complemental strand, 19315997 - 19315890
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  |||| ||| ||||||||   ||||| |||| || ||| ||||||||||| ||||    
T  19315997 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttat 19315898  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  19315897 gattatgt 19315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 1394129 - 1394232
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag--cccatctcatgctagctcccacgttta 546  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| ||||||||    ||||  ||||||| |||||||||||||| | ||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacatcta 1394228  T
Q  547 tgat 550  Q
    ||||    
T  1394229 tgat 1394232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 463 - 555
Target Start/End: Complemental strand, 43813264 - 43813171
Alignment:
Q  463 atgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 555  Q
    |||||||||||||||| || |||| ||||| ||||| ||| ||||||| |||||||| |||||||||| ||||||| | ||||| |||||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt 43813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 5124690 - 5124644
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatg 492  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5124690 taattttcagaactctaatgtcgagttcaatcggaggcaagctaatg 5124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 9633063 - 9633125
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||||||||||||||||||||  |||| ||||| | |||| ||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcgattacgagttagct 9633125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 35096913 - 35096975
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| |||||||||||||||| |||||||| |||  ||| |||||||| ||||||    
T  35096913 tttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagct 35096975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 13200849 - 13200906
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||||| |||||||||||| |||||||| ||||| || |||||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagcta 13200906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 47783000 - 47783057
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 47783057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 485
Target Start/End: Complemental strand, 17283627 - 17283592
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaa 485  Q
    |||||||||||| |||||||||||||||||||||||    
T  17283627 tttcagaactcttatgtcgagttcaataggaggcaa 17283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 1479337 - 1479275
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| || |||||||||||||||||||||  |||| |||| ||||| | ||||||    
T  1479337 tttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactcacaagttagct 1479275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 6969614 - 6969676
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||||||| ||||||| ||||||| |||| |||  |||| |||||||||||| ||||||    
T  6969614 tttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagct 6969676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 1311155 - 1311207
Alignment:
Q  458 ctctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattag 510  Q
    |||| |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  1311155 ctctcatgttgagtttaataggaggtaagtcaatgaggtcgctcacgagttag 1311207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 18481234 - 18481344
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||| |||| ||||  ||||||||||||||| |||||||||||||||||||||||||    
T  18481234 taattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccccatctcatgctagctcccacgtt 18481333  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  18481334 tatgatgatgt 18481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 26440810 - 26440917
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||||| ||||||| |||||||||| |||| ||||    
T  26440810 tttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatctaatgctagctctcacgattat 26440909  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  26440910 gataatgt 26440917  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 7251110 - 7251217
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| | || |||| | |||| ||| ||||| ||||||||||||||||| ||| | ||||    
T  7251110 ttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgattat 7251209  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  7251210 gataatgt 7251217  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 11911471 - 11911398
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 522  Q
    |||||| |||||| |||||||||||||||||||| || | |||| |||| | ||||| |||||| ||| |||||    
T  11911471 ttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtcccccacgagttagctcgggaagccc 11911398  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 522
Target Start/End: Complemental strand, 32536236 - 32536160
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 522  Q
    |||||||  ||||||| |||||||||||||| | |  ||||  |||| ||||||||  |||||||||||||||||||    
T  32536236 taattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagccc 32536160  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 23820524 - 23820634
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 544  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||  ||||||||||||||||||||| ||    
T  23820524 taattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatccatctcatgctagctcccacatt 23820623  T
Q  545 tatgatgatgt 555  Q
    |||||||||||    
T  23820624 tatgatgatgt 23820634  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 21118399 - 21118505
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |  |||||||||||||| ||||||  |||||||||| ||||||||    
T  21118399 ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatctattgctagctccaacgtttat 21118497  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  21118498 gataatgt 21118505  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 469 - 555
Target Start/End: Complemental strand, 24808855 - 24808771
Alignment:
Q  469 agttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 555  Q
    |||||||||||||||||||||||| || | |||| |||||||||||| ||| |||||||||||||||   ||||||||||||||||||    
T  24808855 agttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatctcatgctag---ccacgtttatgatgatgt 24808771  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 557
Target Start/End: Complemental strand, 40901908 - 40901803
Alignment:
Q  453 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 551  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  40901908 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 40901809  T
Q  552 atgtcc 557  Q
    ||||||    
T  40901808 atgtcc 40901803  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 505
Target Start/End: Original strand, 12980735 - 12980790
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 505  Q
    |||||||||||| ||||||||||||| ||||||||| | |||| ||||||||||||    
T  12980735 tttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctcacga 12980790  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 20492489 - 20492547
Alignment:
Q  454 agaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||||| || ||||||| |||||||||||||| |||  |||||||||||||||||||    
T  20492489 agaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagct 20492547  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 29526837 - 29526894
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 29526894  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 10325166 - 10325110
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 512  Q
    |||||| |||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagct 10325110  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 4513076 - 4513183
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 547  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||| |||||||||| ||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtttat 4513175  T
Q  548 gatgatgt 555  Q
    ||| ||||    
T  4513176 gataatgt 4513183  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 942694 - 942804
Alignment:
Q  446 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagg-gtagcccatctcatgctagctcccacgtt 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||   | |||||||||||||| ||||||||||    
T  942694 taattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccccatctcatgctatctcccacgtt 942793  T
Q  545 tatgatgatgt 555  Q
    || ||||||||    
T  942794 tacgatgatgt 942804  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 19047092 - 19047164
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 522  Q
    ||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  19047092 tttcaaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccc 19047164  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 553
Target Start/End: Complemental strand, 13757607 - 13757503
Alignment:
Q  450 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatg 548  Q
    ||||| |||||| |||| ||||| |||| || |||| | ||||||||||||||||||||||||||| |||| |||| | || |||||||| |  ||||||    
T  13757607 tttcaaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatg 13757508  T
Q  549 atgat 553  Q
    |||||    
T  13757507 atgat 13757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 15950809 - 15950866
Alignment:
Q  456 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 513  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 15950866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 12125820 - 12125927
Alignment:
Q  449 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtttat 547  Q
    ||||||||| ||| ||||  | ||||||| ||||||||| ||||| || ||||| ||||||||    |||||| ||||||||||||||| ||| || |||    
T  12125820 ttttcagaattctcatgttcaattcaatatgaggcaagctaatgaagtggctcatgaattagcacatgtagcctcatctcatgctagcttccatgtctat 12125919  T
Q  548 gatgatgt 555  Q
    ||||||||    
T  12125920 gatgatgt 12125927  T

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Target: scaffold0041 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 557
Target Start/End: Original strand, 48110 - 48215
Alignment:
Q  453 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 551  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  48110 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 48209  T
Q  552 atgtcc 557  Q
    ||||||    
T  48210 atgtcc 48215  T

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