View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_12 (Length: 504)
Name: NF15777_low_12
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 23 - 495
Target Start/End: Complemental strand, 17004397 - 17003925
Alignment:
| Q |
23 |
tctccgtgattattatctgttgtgtagcaccgacgcattacatattcacgtctattttctcaaactactatcggtgtcggtgtcattgtcttgtccggtg |
122 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17004397 |
tctctgtgattattatctgttgtgtagcaccgacacattacatattcacgtctattttctcaaactactatcggtgtcggtgtcattgtcttgtctggtg |
17004298 |
T |
|
| Q |
123 |
tcaatgatttgttggcggttcatagattatttgtcttggagtcttccaaacttcaattttatgcaaaactatgactaacttgtaccataatactttttat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17004297 |
tcaatgatttgttggcggttcatagattatttgtcttggagtcttctaaacttcaattttatgcaaaactatgactaacttgtaccataatactttttat |
17004198 |
T |
|
| Q |
223 |
ggaacaagttctagttctatgatcagaagtacctaacattccttttttctatttatacagaaaaccgactacgcgaagcatataaacagctcaagaagag |
322 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17004197 |
ggaactagttctagttctatgatcagaagtacctaacattccttttttctatttatacagaaaaccgactacgcgaagcatataaacagctcaagaagag |
17004098 |
T |
|
| Q |
323 |
aggtattccattggcttcaaaccaagtaaactacagcctcatttatagggtccccgaagaaaatggtgtgaagaaagcctgtgatgaacttgggattaca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17004097 |
aggtattccattggcttcaaaccaagtaaactacagcctcatttatagggtccctgaagaaaatggtgtgaagaaagcctgtgatgaacttgggattaca |
17003998 |
T |
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| Q |
423 |
ttgattgcatattcaccaatagctcaaggtgaaatcctttttactatccaaaaccacaaattaaaagaataat |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
17003997 |
ttgattgcatattcaccaatagctcaaggtgaaatcctttttactattcaaaaccacatattaaaagaataat |
17003925 |
T |
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