View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_low_13 (Length: 486)
Name: NF15777_low_13
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 58 - 470
Target Start/End: Original strand, 42209822 - 42210227
Alignment:
| Q |
58 |
aaggaaaagtcacttttaataaacaaacaacaatgttgatgaaataataaagcttcaaccttaaaacacaaaggtacacaattatacgtgtgagtccaag |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
42209822 |
aaggaaaagtcacttttaataaacaaacaacaatgttgatgaaataataaagcttcaaccttaaaat-caaaggtacacaattataagtgtgagtccaag |
42209920 |
T |
|
| Q |
158 |
ccattcaaaacgatcttgtatttcattcctactcatcatgtgatatgcaatttataccataagattaaaataagacaacctacattctaactatgataat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42209921 |
ccattcaaaacgatcttgtatttcattcctattcatcatgtgatatgcaatttataccataagattaaaataagacaacctacattc-aactatgataat |
42210019 |
T |
|
| Q |
258 |
ttgagttcaaaatacaaaatcaaaacatgaactataagatctcgatatgtcaatttatatcaacgattgcgtgattgtgtgaatatttcaaaaccataag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210020 |
ttgagttcaaaatacaaaatcaaaacatgaactataagat-----tatgccaatttatatcaacgattgcgtgattgtgtgaatatttcaaaaccataag |
42210114 |
T |
|
| Q |
358 |
ctacaaactgtagatgtgttcataacatgtcctgaggtaaagcatcaatgagatgatttttcaaaatttaagaaaacattaaagtaaaaatggtgggggt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210115 |
ctacaaactgtagatgtgttcataacatgtcctgagggaaagcatcaatgagatgatttttcaaaatttaagaaaacattaaagtaaaaatggtgggggt |
42210214 |
T |
|
| Q |
458 |
tagaggatgaatc |
470 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42210215 |
tagaggatgaatc |
42210227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 42209772 - 42209805
Alignment:
| Q |
8 |
aagcaaagggtacttgaaggcccgacaaagtcac |
41 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
42209772 |
aagcaatgggtacttgaaggcccgacaaagtcac |
42209805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University