View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_14 (Length: 486)

Name: NF15777_low_14
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_14
NF15777_low_14
[»] chr3 (23 HSPs)
chr3 (76-470)||(8541441-8541842)
chr3 (38-408)||(8543075-8543445)
chr3 (346-424)||(28504383-28504461)
chr3 (171-263)||(27905172-27905264)
chr3 (346-434)||(28140592-28140681)
chr3 (14-82)||(8541028-8541096)
chr3 (171-263)||(27995040-27995132)
chr3 (352-470)||(27988140-27988247)
chr3 (274-358)||(27994912-27994996)
chr3 (404-470)||(8543602-8543673)
chr3 (170-260)||(28126812-28126902)
chr3 (170-263)||(28140742-28140835)
chr3 (171-236)||(28475587-28475652)
chr3 (274-325)||(27905077-27905128)
chr3 (368-459)||(28099431-28099529)
chr3 (174-263)||(28504233-28504322)
chr3 (70-146)||(11630097-11630172)
chr3 (171-246)||(11405181-11405257)
chr3 (271-306)||(28140666-28140701)
chr3 (271-306)||(28504363-28504398)
chr3 (22-81)||(35223384-35223443)
chr3 (170-246)||(28516587-28516662)
chr3 (376-435)||(28093499-28093558)
[»] chr8 (4 HSPs)
chr8 (24-172)||(14958046-14958192)
chr8 (29-144)||(15292567-15292680)
chr8 (29-144)||(15472936-15473049)
chr8 (89-150)||(9293233-9293293)
[»] chr5 (3 HSPs)
chr5 (24-150)||(7237070-7237195)
chr5 (24-150)||(41715074-41715198)
chr5 (38-150)||(38755669-38755777)
[»] chr6 (4 HSPs)
chr6 (27-169)||(1415544-1415684)
chr6 (24-150)||(33908581-33908699)
chr6 (71-175)||(9627120-9627222)
chr6 (67-169)||(12155378-12155476)
[»] chr1 (2 HSPs)
chr1 (24-149)||(6397661-6397784)
chr1 (96-150)||(28666876-28666929)
[»] chr2 (5 HSPs)
chr2 (72-150)||(38288443-38288520)
chr2 (24-144)||(13486134-13486252)
chr2 (74-146)||(32985879-32985949)
chr2 (22-139)||(31395170-31395284)
chr2 (33-118)||(15358850-15358935)
[»] scaffold0027 (1 HSPs)
scaffold0027 (25-142)||(43626-43742)
[»] chr4 (2 HSPs)
chr4 (28-150)||(865247-865368)
chr4 (24-71)||(3284176-3284223)
[»] scaffold0035 (1 HSPs)
scaffold0035 (26-150)||(24445-24567)
[»] scaffold0067 (1 HSPs)
scaffold0067 (171-246)||(20352-20428)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 76 - 470
Target Start/End: Original strand, 8541441 - 8541842
Alignment:
Q  76 ttggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgttaatttgttgttgttctaacaatatat 175  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8541441 ttggccgaactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgttaatttgttgttgttctaacaatatat 8541540  T
Q  176 gaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagtctcttaaacaagaat 275  Q
    |||| || ||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  8541541 gaatgaacgatcaagaaaaatgatattgttatttacctgatctttccaacaaaatattttcaccacattcactgcatacttaagtctcttgaacaagaat 8541640  T
Q  276 cacaagaatctttaaagatagtgcaaacaataaagacaggaacagtgtttttggataatttgatgagtttagatagtgcaaacaattc--atttgtgata 373  Q
    || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  8541641 cagaagaatctataaagatagtgcaaacaataaagacaggaacaatgtttttggataatttgatgagtttagatagtgcaaacaattcatatttgtgata 8541740  T
Q  374 gattctcattaaagacaattttgaatactttggtttattggattattttttgtttacgat-----gatattaatataagtatctgccatgatattttaat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||    
T  8541741 gattctcattaaagacaattttgaatactttggtttattggattattttttgtttacgatagttaaatattaatataagtatctggcatgatattttaat 8541840  T
Q  469 ta 470  Q
    ||    
T  8541841 ta 8541842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 38 - 408
Target Start/End: Original strand, 8543075 - 8543445
Alignment:
Q  38 gaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatt 137  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||    
T  8543075 gaactatagttgttctatagtcaccgaggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatt 8543174  T
Q  138 taatcttttgttaatttgttgttgttctaacaatatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttca 237  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||    
T  8543175 taatcttttgttaatatgttgttgttctaacaacatatgaatgaatgatcaagaaaaatgatattgttatttaccttatctttccaacaaagtattttca 8543274  T
Q  238 ccacattcagtgcatacttaagtctcttaaacaagaatcacaagaatctttaaagatagtgcaaacaataaagacaggaacagtgtttttggataatttg 337  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8543275 ccacattcactgcatacttaagtctcttgaacaagaatcacaagaatctttaaagacagtgcaaacaataaagacaggaacagtgtttttggataatttg 8543374  T
Q  338 atgagtttagatagtgcaaacaattcatttgtgatagattctcattaaagacaattttgaatactttggtt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8543375 atgagtttagatagtgcaaacaattcatttgtgatagattctcattaaagacaattttcaatactttggtt 8543445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 28504383 - 28504461
Alignment:
Q  346 agatagtgcaaacaattcatttgtgatagattctcattaaagacaattttgaatactttggtttattggattatttttt 424  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28504383 agatagtgcaaacaattcatttgtgaaagattctcattaaagacaattttgaatactttggtttattggattatttttt 28504461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 27905264 - 27905172
Alignment:
Q  171 tatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagtctc 263  Q
    ||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27905264 tatatgaatgaatgatgaagcaaaatgatattgttatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttcagtctc 27905172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 28140681 - 28140592
Alignment:
Q  346 agatagtgcaaacaattcatttgtgatagattctcattaaagacaattttgaatactttggtttattggatta-ttttttgtttacgatg 434  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  28140681 agatagtgcaaacaattcatttgtaaaagattctcattaaagacaattttgaatactttggtttattgaattatttttttgtttacgatg 28140592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 8541028 - 8541096
Alignment:
Q  14 acagaaaccgcagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccg 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8541028 acagaaaccgcagaaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccg 8541096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 27995132 - 27995040
Alignment:
Q  171 tatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagtctc 263  Q
    ||||||||| |||||||||||||||||| || | |||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||    
T  27995132 tatatgaatgaatgatcaagcaaaatgagattgttatttacctgatctttccaacacagtattttcgccacattcaccgcatacttaagtctc 27995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 470
Target Start/End: Complemental strand, 27988247 - 27988140
Alignment:
Q  352 tgcaaacaattcatttgtgatagattctcattaaagacaattttgaatactttggtttattggattattttttgtttacgatgatattaatataagtatc 451  Q
    |||||||| |||||||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  27988247 tgcaaacatttcatttgcgaaagattctcatta--gacaattttgaatactttggtttattggattattttttgt---------tattaatataagtatc 27988159  T
Q  452 tgccatgatattttaatta 470  Q
    |||||||| ||||||||||    
T  27988158 tgccatgacattttaatta 27988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 27994996 - 27994912
Alignment:
Q  274 atcacaagaatctttaaagatagtgcaaacaataaagacaggaacagtgtttttggataatttgatgagtttagatagtgcaaac 358  Q
    ||||||||||| |||||||||| ||||| ||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||    
T  27994996 atcacaagaatatttaaagatattgcaaccaataaatataggaacagtgtttttggataatatgatgagtctagatagtgcaaac 27994912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 8543602 - 8543673
Alignment:
Q  404 tggtttattggattattttttgtttacgatg-----atattaatataagtatctgccatgatattttaatta 470  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||| |||||||||||||||    
T  8543602 tggtttattggattattttttgtttacgatggttaaatattaatataagtatctgcaatgatattttaatta 8543673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 28126902 - 28126812
Alignment:
Q  170 atatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagt 260  Q
    |||| ||||| |||||| ||||||||||| || | |||||||||||||||||||||| |||||||||  ||||||||| ||||||| ||||    
T  28126902 atatttgaatgaatgatgaagcaaaatgaaattgatatttacctgatctttccaacacagtattttcggcacattcagcgcatactcaagt 28126812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 28140835 - 28140742
Alignment:
Q  170 atatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagtctc 263  Q
    |||| ||||| |||||| ||||||||||| || | |||||||||||||||||||||| |||||||||  ||||||||  ||||||| |||||||    
T  28140835 atatttgaatgaatgatgaagcaaaatgaaattgatatttacctgatctttccaacacagtattttcggcacattcaacgcatactcaagtctc 28140742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 28475587 - 28475652
Alignment:
Q  171 tatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttc 236  Q
    ||||||||| |||||||||| |||||||||| | |||||||||||||||||||||| |||||||||    
T  28475587 tatatgaatgaatgatcaagaaaaatgatattgttatttacctgatctttccaacacagtattttc 28475652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 27905128 - 27905077
Alignment:
Q  274 atcacaagaatctttaaagatagtgcaaacaataaagacaggaacagtgttt 325  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  27905128 atcacaagaatctttaaagatagtgcaaacaataaagataggaacaatgttt 27905077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 459
Target Start/End: Complemental strand, 28099529 - 28099431
Alignment:
Q  368 gtgatagattctcattaaagacaattttgaatactttggtttattggattatttttt--gtttacgatg-----atattaatataagtatctgccatga 459  Q
    |||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||  ||||| ||||     || ||||||||||||||||||||||    
T  28099529 gtgaaagattcccattaaagatagttttgaatactttggtttattggattattttttttgtttatgatggttagattttaatataagtatctgccatga 28099431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 28504233 - 28504322
Alignment:
Q  174 atgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattcagtgcatacttaagtctc 263  Q
    |||||| |||||||||| ||||||| || | |||||||||||||||||||||| ||||||||   ||||||||  ||||||| |||||||    
T  28504233 atgaatgaatgatcaagaaaaatgaaattgttatttacctgatctttccaacacagtatttttggcacattcaacgcatactcaagtctc 28504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 11630097 - 11630172
Alignment:
Q  70 gcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatctttt 146  Q
    |||||||||||| ||||| ||||| ||||||||| || ||||||||||| ||| || ||||||||||||||||||||    
T  11630097 gcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttct-tttgttctcttatttaatctttt 11630172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 11405257 - 11405181
Alignment:
Q  171 tatatgaataaatgatcaagcaaaa-tgatatggctatttacctgatctttccaacaaagtattttcaccacattca 246  Q
    ||||||||| |  |||||||||||| ||| || | |||||||||||||||||||||| ||||||||| |||||||||    
T  11405257 tatatgaatcaccgatcaagcaaaaatgagattgttatttacctgatctttccaacacagtattttcgccacattca 11405181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 28140701 - 28140666
Alignment:
Q  271 agaatcacaagaatctttaaagatagtgcaaacaat 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  28140701 agaatcacaagaatctttaaagatagtgcaaacaat 28140666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 28504363 - 28504398
Alignment:
Q  271 agaatcacaagaatctttaaagatagtgcaaacaat 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  28504363 agaatcacaagaatctttaaagatagtgcaaacaat 28504398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 35223443 - 35223384
Alignment:
Q  22 cgcagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggcc 81  Q
    ||||| |||| |||| |||||||||||| ||||||||| ||||||||||||| |||||||    
T  35223443 cgcagaaatataaacggaactatagctgctctatagtcgcagagataggcaccattggcc 35223384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 28516587 - 28516662
Alignment:
Q  170 atatatgaataaatgatcaagcaaaatgatatggctatttacctgatctttccaacaaagtattttcaccacattca 246  Q
    ||||| |||| ||||||||| ||||| || || | |||||||||||||||||| |||  ||||||||||||||||||    
T  28516587 atatacgaatgaatgatcaatcaaaaagagattgttatttacctgatctttcc-acacggtattttcaccacattca 28516662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 28093558 - 28093499
Alignment:
Q  376 ttctcattaaagacaattttgaatactttggtttattggattattttttgtttacgatga 435  Q
    |||||||| ||||||||||| ||||||| |||| |||||||| ||||| ||||| |||||    
T  28093558 ttctcattgaagacaatttttaatacttcggttgattggattgtttttggtttatgatga 28093499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 14958046 - 14958192
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    |||||||||||||| ||||||||||| |||||| || ||||| ||||||||||||||||||||| ||||| ||||||| | ||||||||||||| ||||     
T  14958046 cagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccgaactgtgttaacaaatatcctatgttcattgtcttcctct- 14958144  T
Q  124 ttcgttctcttatttaatcttttgttaatttgttgttgttctaacaata 172  Q
    ||||||||||| |||||||||||||| | | ||||||||||||||||||    
T  14958145 ttcgttctcttgtttaatcttttgtt-actagttgttgttctaacaata 14958192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 15292680 - 15292567
Alignment:
Q  29 atagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgt 128  Q
    ||||||||| |||||||| || | |||||||  |||||||||||||||||| |||||||||||||  |||||||||||||||||  ||||  || |||||    
T  15292680 atagaaacaaaactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaa-caatatcgtgtgttcattaacttttact-ttcgt 15292583  T
Q  129 tctcttatttaatctt 144  Q
    ||||||||||||||||    
T  15292582 tctcttatttaatctt 15292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 15473049 - 15472936
Alignment:
Q  29 atagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgt 128  Q
    ||||||||| |||||||| || | |||||||  |||||||||||||||||| |||||||||||||  |||||||||||||||||  ||||  || |||||    
T  15473049 atagaaacaaaactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaa-caatatcgtgtgttcattaacttttact-ttcgt 15472952  T
Q  129 tctcttatttaatctt 144  Q
    ||||||||||||||||    
T  15472951 tctcttatttaatctt 15472936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 9293293 - 9293233
Alignment:
Q  89 gttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgtta 150  Q
    ||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctct-tttgttctcttatttaatcttttgtta 9293233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 7237195 - 7237070
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    |||||||| |||  ||| |||||||| ||||||| | ||||| ||| || |||||||||||||||| ||| |||||||||||||||||||||||| |||     
T  7237195 cagtaataaaaatggaattatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttct- 7237097  T
Q  124 ttcgttctcttatttaatcttttgtta 150  Q
    |||||||||||||||||||||||||||    
T  7237096 ttcgttctcttatttaatcttttgtta 7237070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 41715074 - 41715198
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    ||||||||||||| ||||||||| || ||||| |||  |||| |||||||||||| ||||||||| ||||  || ||||| |||| |||||||||||||     
T  41715074 cagtaatagaaacggaactatagatgctctatcgtcgtagaggtaggcacaattgtccgaactgcattaa-caagatcgtatgttaattgtctttctct- 41715171  T
Q  124 ttcgttctcttatttaatcttttgtta 150  Q
    |||||||||||||||||||||||||||    
T  41715172 ttcgttctcttatttaatcttttgtta 41715198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 38755669 - 38755777
Alignment:
Q  38 gaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatt 137  Q
    |||||||| || ||||||| || ||||| |||||||||||| || |||||  |||| |||||| |||||||||   ||||||||| ||||||||||||||    
T  38755669 gaactataactattctataatcgcagaggtaggcacaattgaccaaactgtattaacaaatatggtgtgttca---tctttctct-ttcgttctcttatt 38755764  T
Q  138 taatcttttgtta 150  Q
    |||||||||||||    
T  38755765 taatcttttgtta 38755777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 1415544 - 1415684
Alignment:
Q  27 taatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtc-tttctctctt 125  Q
    ||||||||||||||||||||||| |||||| ||  |||| ||| ||||||||||||||||||||||| || |||||||| || |||||| ||||||| ||    
T  1415544 taatagaaacagaactatagctgctctataatcgtagaggtagccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttttctct-tt 1415642  T
Q  126 cgttctcttatttaatcttttgttaatttgttgttgttctaaca 169  Q
    |||||||||| ||||||||||||| ||| ||| |||||||||||    
T  1415643 cgttctctta-ttaatcttttgtt-attagtttttgttctaaca 1415684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 33908699 - 33908581
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    ||||||||||||| |||||||||| | |||||||       | ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||     
T  33908699 cagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtctttctct- 33908608  T
Q  124 ttcgttctcttatttaatcttttgtta 150  Q
    |||||||||||||||||| ||||||||    
T  33908607 ttcgttctcttatttaatattttgtta 33908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 9627222 - 9627120
Alignment:
Q  71 cacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgttaatttgttgttgttctaacaa 170  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||   | ||||||||||||| ||    
T  9627222 cacaattggctgaactgggttaacaaatatcatgtgttcattgtgtttctct-ttcattctcttatttaatcttttgtt-tctagttgttgttctaaaaa 9627125  T
Q  171 tatat 175  Q
    |||||    
T  9627124 tatat 9627120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 12155476 - 12155378
Alignment:
Q  67 taggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgttaatttgttgttgttcta 166  Q
    ||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||  |||| ||||||| | | ||||||||||||    
T  12155476 taggcacaatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctct-ttcgttctctta--taattttttgtt-actagttgttgttcta 12155381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 6397784 - 6397661
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||| |||||| || ||||| |||| |||  ||     
T  6397784 cagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaa-tggccgaagtgcgttaacaaatattgtatgttcgttgtgttttact- 6397687  T
Q  124 ttcgttctcttatttaatcttttgtt 149  Q
    || |||||||||||||||||| ||||    
T  6397686 ttggttctcttatttaatcttatgtt 6397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 28666876 - 28666929
Alignment:
Q  96 aatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgtta 150  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctct-ttcgttctcttatttaatcttttgtta 28666929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 38288520 - 38288443
Alignment:
Q  72 acaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgttctcttatttaatcttttgtta 150  Q
    ||||||||||||||| |||||| ||||||| |||||| ||||||||||||| |||  ||||||||||||||||||||||    
T  38288520 acaattggccgaactacgttaacaaatatcatgtgttaattgtctttctct-ttcaatctcttatttaatcttttgtta 38288443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 13486252 - 13486134
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctc 123  Q
    |||||||||||| ||||| |||| || |||||||||||| || |||| |||||||   |||||| ||||| |||||| || |||||||||| ||| |||     
T  13486252 cagtaatagaaatagaacaatagttgatctatagtcacataggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgt-tttttct- 13486155  T
Q  124 ttcgttctcttatttaatctt 144  Q
    |||||||||||||||||||||    
T  13486154 ttcgttctcttatttaatctt 13486134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 32985879 - 32985949
Alignment:
Q  74 aattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcgtt-ctcttatttaatctttt 146  Q
    ||||||||||||| |||||| ||||| ||||||||||   ||||||||| |||||| |||||||||||| ||||    
T  32985879 aattggccgaactacgttaacaaataacgtgtgttca---tctttctcttttcgttcctcttatttaatttttt 32985949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 31395284 - 31395170
Alignment:
Q  22 cgcagtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctc 121  Q
    |||||||||| |||| ||| |||||||| | ||||| || |||  || |||| ||||| ||| ||| ||||| ||||||| ||||||||||||||||  |    
T  31395284 cgcagtaatataaacggaattatagctgctttatagccataga--taagcaccattggacgagctgtgttaacaaatatcatgtgttcattgtcttttac 31395187  T
Q  122 tcttcgttctcttattta 139  Q
    | |||||| |||||||||    
T  31395186 t-ttcgttttcttattta 31395170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 15358935 - 15358850
Alignment:
Q  33 aaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtcttt 118  Q
    |||| |||| |||| |||||||||||| ||||| ||||||  ||| | | ||||||||||| ||| ||| ||||||||||| ||||    
T  15358935 aaacggaacaatagttgttctatagtcgcagaggtaggcatcattagtcaaactgcgttaacaaagatcttgtgttcattgccttt 15358850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 43742 - 43626
Alignment:
Q  25 agtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctct 124  Q
    |||||||||| ||||||||| | ||||| ||||||||| |||||  || ||||||||||| ||| |||| ||||||  |||||| ||| ||||||||| |    
T  43742 agtaatagaatcagaactattgttgttcaatagtcacatagataaacataattggccgaattgcattaacaaatattatgtgtttattatctttctct-t 43644  T
Q  125 tcgttctcttatttaatc 142  Q
    | ||||||||||||||||    
T  43643 ttgttctcttatttaatc 43626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 865368 - 865247
Alignment:
Q  28 aatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctcttcg 127  Q
    ||||||||| ||| |||||||  |||||||||  |||||||  ||||||||  |||||  |||||| ||||||||||| |||||| |||||  || ||||    
T  865368 aatagaaacggaattatagctactctatagtcgtagagataaacacaattgatcgaaccacgttaacaaatatcgtgttttcattttcttttact-ttcg 865270  T
Q  128 ttctcttatttaatcttttgtta 150  Q
    |||||||||||||| ||||||||    
T  865269 ttctcttatttaattttttgtta 865247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 3284223 - 3284176
Alignment:
Q  24 cagtaatagaaacagaactatagctgttctatagtcacagagataggc 71  Q
    |||||||| |||| ||||||||  ||||||||||||||||||||||||    
T  3284223 cagtaataaaaacggaactataattgttctatagtcacagagataggc 3284176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 24445 - 24567
Alignment:
Q  26 gtaatagaaacagaactatagctgttctatagtcacagagataggcacaattggccgaactgcgttaataaatatcgtgtgttcattgtctttctctctt 125  Q
    ||||||||||| |||||| ||||| ||||||||| ||||| |||||| |||||||||||   | ||||  || ||||||| ||||||||||||  || ||    
T  24445 gtaatagaaacggaactacagctgctctatagtcgcagaggtaggcataattggccgaataactttaa-caagatcgtgttttcattgtcttttact-tt 24542  T
Q  126 cgttctcttatttaatcttttgtta 150  Q
     |||||||||||||||||| |||||    
T  24543 tgttctcttatttaatcttctgtta 24567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 20428 - 20352
Alignment:
Q  171 tatatgaataaatgatcaagcaaaa-tgatatggctatttacctgatctttccaacaaagtattttcaccacattca 246  Q
    ||||||||| |  |||||||||||| ||| || | |||||||||||||||||||||| ||||||||| |||||||||    
T  20428 tatatgaatcaccgatcaagcaaaaatgagattgttatttacctgatctttccaacacagtattttcgccacattca 20352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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