View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_15 (Length: 477)
Name: NF15777_low_15
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 9776790 - 9776368
Alignment:
| Q |
10 |
ctgaatggagcatcaacaacatttgaacttcacaaccaaacctgacgtggcagtaaaaaccctaacaacaaagaatcccaccgcccaatctggccgtggc |
109 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9776790 |
ctgaatggagcagcaacaacatttgaacttcacaaccaaacctgacgtggcagtaaaaaccctaacaacaaagaatcccgccgcccaatctggccgtggc |
9776691 |
T |
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| Q |
110 |
ggaaccagacatccggttttccacggcgtcaggaaaaggcggtggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggctag |
209 |
Q |
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| T |
9776690 |
ggaaccagacatccggttttccacggcgtcaggaaaaggcggtggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggctag |
9776591 |
T |
|
| Q |
210 |
ggtcttttccggcgccggagatggctgcaaaggcttatgatgttgctgcatattgtttgaaaggttgtaaagcacagctgaattttcctgatgaagtgca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776590 |
ggtcttttccggcgccggagatggctgcaaaggcttatgatgttgctgcatattgtttgaaaggttgtaaagcacagctgaattttcctgatgaagtgca |
9776491 |
T |
|
| Q |
310 |
ccgtctgccggtgcttcctccgccgtctttgtgtactgctagggatattcaagctgcggcggctaaagcagctcgtatgatggttaaggctgttgcttcg |
409 |
Q |
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| T |
9776490 |
ccgtctgccggtgcttcctccgccgtctttgtgtactgctagggatattcaagctgcggcggctaaagcagctcgtatgatggttaaggctgttgcttcg |
9776391 |
T |
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| Q |
410 |
ccggaggatagtagcaatgattc |
432 |
Q |
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| T |
9776390 |
ccggaggatagtagcaatgattc |
9776368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 41521694 - 41521749
Alignment:
| Q |
152 |
tggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggct |
207 |
Q |
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| T |
41521694 |
tggggcaaatgggtatcagagattagagagccaagaaaaaaatcaagaatttggct |
41521749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 16357926 - 16357871
Alignment:
| Q |
152 |
tggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggct |
207 |
Q |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggct |
16357871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 3996488 - 3996430
Alignment:
| Q |
152 |
tggggaaaatgggtgtcagagattagagag-ccaagaaaaaagtcaagaatatggctagg |
210 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||||||| |||||||| |||||||| |
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| T |
3996488 |
tggggaaaatgggtttcagaaattagagagcccaagaaaaaa-tcaagaatttggctagg |
3996430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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